CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG32187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16500.1	KXG32187	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002301_P001	Maize	cytosol, nucleus, plastid	60.0	79.17
Os04t0617700-01	Rice	cytosol, plasma membrane, plastid	14.74	68.85
TraesCS2D01G459600.1	Wheat	cytosol	51.23	65.47
TraesCS2B01G481200.1	Wheat	cytosol	50.18	64.71
TraesCS2B01G480800.1	Wheat	cytosol	50.18	64.41
TraesCS2B01G481300.1	Wheat	cytosol	49.82	64.25
TraesCS2A01G459300.1	Wheat	cytosol	49.82	63.68
HORVU2Hr1G104270.1	Barley	cytosol	39.3	63.28
TraesCS2D01G459800.1	Wheat	nucleus	48.77	62.9
TraesCS2A01G459500.1	Wheat	cytosol	49.12	60.61
TraesCS2D01G459700.1	Wheat	cytosol	44.21	60.58
TraesCS2B01G480900.1	Wheat	cytosol	43.86	60.39
TraesCS2A01G459400.1	Wheat	cytosol	43.86	58.96
HORVU2Hr1G104300.1	Barley	cytosol, nucleus	50.88	57.09
HORVU0Hr1G005480.2	Barley	cytosol	35.44	47.87
Solyc07g066570.2.1	Tomato	cytosol	27.72	41.58
GSMUA_Achr7P03500_001	Banana	cytosol	30.53	40.65
GSMUA_Achr1P25720_001	Banana	cytosol	29.47	39.25
GSMUA_AchrUn_...	Banana	cytosol	28.07	38.28
PGSC0003DMT400056874	Potato	cytosol	29.47	38.18
VIT_19s0085g00030.t01	Wine grape	cytosol	28.07	37.21
GSMUA_Achr9P30650_001	Banana	cytosol	28.42	36.0
CDX76373	Canola	nucleus	29.12	35.17
CDY37016	Canola	nucleus	29.12	35.17
CDX88511	Canola	nucleus	29.12	35.17
GSMUA_Achr11P...	Banana	cytosol	29.47	34.85
Bra035096.1-P	Field mustard	nucleus	28.07	34.33
VIT_10s0092g00640.t01	Wine grape	cytosol	26.32	34.09
KRH13717	Soybean	nucleus	29.82	33.86
AT1G79160.1	Thale cress	cytosol	28.07	33.47
Bra026718.1-P	Field mustard	nucleus	27.72	32.64
CDY51001	Canola	nucleus	27.37	31.97
Bra026046.1-P	Field mustard	cytosol, nucleus, plastid	27.02	31.43
AT1G16500.1	Thale cress	cytosol	28.07	30.89
CDX81765	Canola	cytosol	25.96	30.71
CDY55881	Canola	cytosol, nucleus, plastid	26.32	30.61
CDX79304	Canola	cytosol	24.21	30.53
CDY68470	Canola	cytosol, nucleus, plastid	25.96	30.2
EER91121	Sorghum	cytosol	25.26	29.88

Protein Annotations

EnsemblPlants:OQU82335	EnsemblPlantsGene:SORBI_3006G216900	PANTHER:PTHR33177	PANTHER:PTHR33177:SF6	ProteinID:OQU82335	ProteinID:OQU82335.1
SEG:seg	UniParc:UPI000B8BA15D	UniProt:A0A1Z5RFX5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr6:-:56469165..56470953

Molecular Weight (calculated)

28910.4 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.225

Length

285 amino acids

Sequence
(BLAST)

001: MPINSALLWG SIFIDLPVPG LRGPHVCQGG GPAAAVRQSA RANQRQRGVA IAADDRRSIE KGIPGGGSPP GMMAADVSSV ARLLRGEAGK KGGPEIVTMD
101: LLGGCGGGGA AEDEVVDLEV TVPAGWERRL DLLSGKTFLT PRHPSVQGGH QDLNLPPPAA VAAPAAPTTN SAAVCTLDMV RSALERAAAG RTTASPATST
201: SSASTSSSSS SAGKRNRSPQ PASPAMRAAA CPSCLTYVLI AEEDPRCPRC SARVPPLRGK KSAAAAEGSG KKPRIDLNAA AEEME

Best Arabidopsis Sequence Match ( AT1G79160.1 )
(BLAST)

001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI

Arabidopsis Description

Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.