Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | CDX90948 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | CDX97257 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | CDY01921 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | CDY64806 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026718.1-P | Field mustard | nucleus | 93.44 | 94.21 |
| CDX81765 | Canola | cytosol | 90.16 | 91.29 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 67.62 | 67.35 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 66.8 | 66.53 |
| AT1G16500.1 | Thale cress | cytosol | 66.8 | 62.93 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 51.23 | 58.14 |
| CDX88511 | Canola | nucleus | 54.92 | 56.78 |
| CDY37016 | Canola | nucleus | 54.92 | 56.78 |
| CDX76373 | Canola | nucleus | 54.92 | 56.78 |
| Solyc07g066570.2.1 | Tomato | cytosol | 40.57 | 52.11 |
| PGSC0003DMT400056874 | Potato | cytosol | 45.08 | 50.0 |
| CDX79304 | Canola | cytosol | 45.49 | 49.12 |
| KRH13717 | Soybean | nucleus | 49.18 | 47.81 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 9.84 | 39.34 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 33.61 | 38.32 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 33.61 | 36.77 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 31.97 | 36.11 |
| TraesCS2B01G480800.1 | Wheat | cytosol | 32.38 | 35.59 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.33 | 35.41 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 31.97 | 34.98 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 29.51 | 34.78 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 30.33 | 34.58 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 25.0 | 34.46 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 31.15 | 34.39 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 31.15 | 34.39 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 31.15 | 34.39 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 29.1 | 34.13 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 31.97 | 33.77 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 29.1 | 33.49 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 28.69 | 31.11 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 32.38 | 31.1 |
| GSMUA_Achr11P... | Banana | cytosol | 30.33 | 30.71 |
| Zm00001d013614_P001 | Maize | cytosol | 9.43 | 29.87 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 25.0 | 28.91 |
| OQU82335 | Sorghum | plastid | 31.97 | 27.37 |
| EER91121 | Sorghum | cytosol | 26.23 | 26.56 |
| Zm00001d013615_P001 | Maize | cytosol | 24.59 | 26.2 |
| Zm00001d033459_P001 | Maize | cytosol | 24.18 | 25.99 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 23.36 | 25.56 |
| Os03t0660700-01 | Rice | nucleus | 19.67 | 25.0 |
| TraesCS4D01G015300.1 | Wheat | cytosol | 23.36 | 24.89 |
| TraesCS4A01G296700.1 | Wheat | nucleus | 22.95 | 24.35 |
| HORVU4Hr1G002540.1 | Barley | plastid | 21.31 | 15.52 |
Protein Annotations
| EnsemblPlants:CDY51001 | EnsemblPlantsGene:GSBRNA2T00097980001 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | ProteinID:CDY51001 | ProteinID:CDY51001.1 |
| SEG:seg | UniParc:UPI0004EE34EB | UniProt:A0A078ILW1 | MapMan:35.2 | : | : |
Description
BnaA09g56300DBnaA09g56300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILW1]
Coordinates
chrLK032955:-:68201..69163
Molecular Weight (calculated)
26373.3 Da
IEP (calculated)
7.680
GRAVY (calculated)
-0.416
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MTADVSYIVR ILGRYNDDRM TAKDSSGPGS SVALMTRDLL GSAGCGGDDH DHDLELDLDL KVPNGWEKRL DLKSGKVYLQ QCNSTSSSTH LRRSDQSNQT
101: VPRFQDLNYP PVSSKPPERP LLSLFDDASL ELKLVPSSSP PSSSSSLSLP SSSSSFQSVC TLDKVKSALE RVGKESSEMI KKRKSPEDGV CDLTAEASSP
201: LAVGCPGCLS YVLVMKNNPK CPRCNSFVPL AAMKKTKIDL NISI
101: VPRFQDLNYP PVSSKPPERP LLSLFDDASL ELKLVPSSSP PSSSSSLSLP SSSSSFQSVC TLDKVKSALE RVGKESSEMI KKRKSPEDGV CDLTAEASSP
201: LAVGCPGCLS YVLVMKNNPK CPRCNSFVPL AAMKKTKIDL NISI
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
Arabidopsis Description
>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.