Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008345_P003 | |
| Zm00001d040274_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | Zm00001d008345_P003 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | Zm00001d040274_P001 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 20.37 | 72.13 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 68.98 | 66.82 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 54.17 | 66.1 |
| TraesCS2B01G480800.1 | Wheat | cytosol | 67.59 | 65.77 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 67.59 | 65.47 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 66.2 | 64.71 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 65.74 | 64.25 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 65.28 | 63.8 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 59.72 | 62.02 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 65.28 | 61.04 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 58.33 | 60.87 |
| OQU82335 | Sorghum | plastid | 79.17 | 60.0 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 57.87 | 58.96 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 68.98 | 58.66 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 48.61 | 49.76 |
| Solyc07g066570.2.1 | Tomato | cytosol | 38.89 | 44.21 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 42.13 | 42.52 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 41.67 | 42.06 |
| PGSC0003DMT400056874 | Potato | cytosol | 40.74 | 40.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.96 | 39.23 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 37.04 | 37.21 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 37.96 | 36.44 |
| GSMUA_Achr11P... | Banana | cytosol | 40.28 | 36.1 |
| CDY37016 | Canola | nucleus | 37.96 | 34.75 |
| CDX88511 | Canola | nucleus | 37.96 | 34.75 |
| CDX76373 | Canola | nucleus | 37.96 | 34.75 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 35.19 | 34.55 |
| Bra035096.1-P | Field mustard | nucleus | 37.04 | 34.33 |
| KRH13717 | Soybean | nucleus | 37.96 | 32.67 |
| AT1G79160.1 | Thale cress | cytosol | 36.11 | 32.64 |
| CDX79304 | Canola | cytosol | 33.8 | 32.3 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 36.57 | 32.24 |
| Bra026718.1-P | Field mustard | nucleus | 36.11 | 32.23 |
| CDY51001 | Canola | nucleus | 36.11 | 31.97 |
| CDX81765 | Canola | cytosol | 35.19 | 31.54 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 35.65 | 31.43 |
| AT1G16500.1 | Thale cress | cytosol | 37.5 | 31.27 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 35.19 | 31.02 |
| Zm00001d033459_P001 | Maize | cytosol | 31.48 | 29.96 |
| Zm00001d013615_P001 | Maize | cytosol | 30.09 | 28.38 |
| Zm00001d013614_P001 | Maize | cytosol | 8.33 | 23.38 |
Protein Annotations
| EMBL:EU971894 | EnsemblPlants:Zm00001d002301_P001 | EnsemblPlants:Zm00001d002301_T001 | EnsemblPlantsGene:Zm00001d002301 | EntrezGene:100278091 | PANTHER:PTHR33177 |
| PANTHER:PTHR33177:SF6 | ProteinID:ONM13863.1 | SEG:seg | UniParc:UPI000182EDA6 | UniProt:B6U3S9 | MapMan:35.2 |
Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:B6U3S9]
Coordinates
chr2:+:9772239..9773464
Molecular Weight (calculated)
21873.9 Da
IEP (calculated)
8.623
GRAVY (calculated)
-0.159
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAADVSSVA RLLRGEAVKK GGPEIVTMDL LGGCGGGVAA EDEVVDLDVT VPAGWERRLD LLSGKTFLTP RHQSVQGGHQ DLNLPPPAAG SASAPNTNNS
101: SAAVCTLDMV RSALERATAG RTAASPATSS TSSASTSSSS SAGKRNRRSP LPATPAMRAA ACPSCLTYVL IAEADPRCPR CAARVPPLRG KAAGAATVGS
201: GKKPRIDLNA AADEME
101: SAAVCTLDMV RSALERATAG RTAASPATSS TSSASTSSSS SAGKRNRRSP LPATPAMRAA ACPSCLTYVL IAEADPRCPR CAARVPPLRG KAAGAATVGS
201: GKKPRIDLNA AADEME
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.