Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
- nucleus 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0253300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | Os01t0253300-01 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G104270.1 | Barley | cytosol | 63.93 | 22.03 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 77.05 | 21.08 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 72.13 | 20.37 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 73.77 | 20.18 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 67.21 | 19.71 |
| TraesCS2B01G480800.1 | Wheat | cytosol | 70.49 | 19.37 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 65.57 | 19.32 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 67.21 | 18.55 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 67.21 | 18.55 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 67.21 | 18.55 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 62.3 | 17.92 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 73.77 | 17.72 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 60.66 | 17.54 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 65.57 | 17.32 |
| Solyc07g066570.2.1 | Tomato | cytosol | 45.9 | 14.74 |
| OQU82335 | Sorghum | plastid | 68.85 | 14.74 |
| GSMUA_AchrUn_... | Banana | cytosol | 44.26 | 12.92 |
| PGSC0003DMT400056874 | Potato | cytosol | 45.9 | 12.73 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 42.62 | 12.15 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 40.98 | 11.68 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 39.34 | 11.16 |
| CDX79304 | Canola | cytosol | 40.98 | 11.06 |
| GSMUA_Achr11P... | Banana | cytosol | 42.62 | 10.79 |
| Bra035096.1-P | Field mustard | nucleus | 40.98 | 10.73 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 39.34 | 10.67 |
| CDY37016 | Canola | nucleus | 40.98 | 10.59 |
| CDX88511 | Canola | nucleus | 40.98 | 10.59 |
| CDX76373 | Canola | nucleus | 40.98 | 10.59 |
| AT1G79160.1 | Thale cress | cytosol | 40.98 | 10.46 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 37.7 | 10.45 |
| Bra026718.1-P | Field mustard | nucleus | 39.34 | 9.92 |
| CDY51001 | Canola | nucleus | 39.34 | 9.84 |
| AT1G16500.1 | Thale cress | cytosol | 40.98 | 9.65 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 37.7 | 9.39 |
| KRH13717 | Soybean | nucleus | 37.7 | 9.16 |
| CDX81765 | Canola | cytosol | 36.07 | 9.13 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 36.07 | 8.98 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 36.07 | 8.98 |
| Os03t0660700-01 | Rice | nucleus | 6.56 | 2.08 |
Protein Annotations
| EnsemblPlants:Os04t0617700-01 | EnsemblPlantsGene:Os04g0617700 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | ProteinID:BAH92820.1 | ProteinID:BAS91028.1 |
| SEG:seg | UniParc:UPI0001B66BE3 | UniProt:C7J1W1 | MapMan:35.2 | : | : |
Description
Similar to H0313F03.6 protein. (Os04t0617700-01)
Coordinates
chr4:-:31379330..31379841
Molecular Weight (calculated)
6053.1 Da
IEP (calculated)
4.855
GRAVY (calculated)
-0.275
Length
61 amino acids
Sequence
(BLAST)
(BLAST)
1: AAACPSCLTY VLIAEADPRC PRCAGNVPPL AGKPREASAG AGDGSGKKPK IDLNAAADDT E
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.