Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS3A01G172000.1 | |
TraesCS3B01G202800.2 | |
TraesCS3D01G178500.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G16500.1 | TraesCS3A01G172000.1 | AT4G02150.1 | 21798944 |
AT1G16500.1 | TraesCS3B01G202800.2 | AT4G02150.1 | 21798944 |
AT1G16500.1 | TraesCS3D01G178500.1 | AT4G02150.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2B01G480800.1 | Wheat | cytosol | 95.52 | 95.95 |
TraesCS2D01G459600.1 | Wheat | cytosol | 93.72 | 93.72 |
HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 91.93 | 80.71 |
TraesCS2A01G459500.1 | Wheat | cytosol | 82.51 | 79.65 |
TraesCS2A01G459400.1 | Wheat | cytosol | 73.99 | 77.83 |
Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 20.18 | 73.77 |
Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 65.47 | 67.59 |
HORVU0Hr1G005480.2 | Barley | cytosol | 60.99 | 64.45 |
OQU82335 | Sorghum | plastid | 63.68 | 49.82 |
Solyc07g066570.2.1 | Tomato | cytosol | 34.98 | 41.05 |
GSMUA_Achr1P25720_001 | Banana | cytosol | 38.56 | 40.19 |
GSMUA_Achr7P03500_001 | Banana | cytosol | 38.12 | 39.72 |
GSMUA_Achr9P30650_001 | Banana | cytosol | 38.56 | 38.22 |
PGSC0003DMT400056874 | Potato | cytosol | 37.22 | 37.73 |
GSMUA_Achr11P... | Banana | cytosol | 40.36 | 37.34 |
GSMUA_AchrUn_... | Banana | cytosol | 34.08 | 36.36 |
VIT_19s0085g00030.t01 | Wine grape | cytosol | 33.63 | 34.88 |
VIT_10s0092g00640.t01 | Wine grape | cytosol | 32.74 | 33.18 |
Bra026718.1-P | Field mustard | nucleus | 35.43 | 32.64 |
CDY37016 | Canola | nucleus | 34.53 | 32.63 |
CDX88511 | Canola | nucleus | 34.53 | 32.63 |
CDX76373 | Canola | nucleus | 34.53 | 32.63 |
Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 35.43 | 32.24 |
AT1G79160.1 | Thale cress | cytosol | 34.53 | 32.22 |
Bra035096.1-P | Field mustard | nucleus | 33.63 | 32.19 |
CDY51001 | Canola | nucleus | 34.98 | 31.97 |
CDX81765 | Canola | cytosol | 34.08 | 31.54 |
AT1G16500.1 | Thale cress | cytosol | 36.32 | 31.27 |
CDY55881 | Canola | cytosol, nucleus, plastid | 33.63 | 30.61 |
TraesCS4A01G296700.1 | Wheat | nucleus | 31.39 | 30.43 |
KRH13717 | Soybean | nucleus | 34.08 | 30.28 |
CDY68470 | Canola | cytosol, nucleus, plastid | 33.18 | 30.2 |
CDX79304 | Canola | cytosol | 30.49 | 30.09 |
Protein Annotations
EnsemblPlants:TraesCS2A01G459300.1 | EnsemblPlantsGene:TraesCS2A01G459300 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2A:-:706488360..706489379
Molecular Weight (calculated)
22772.9 Da
IEP (calculated)
8.409
GRAVY (calculated)
-0.317
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEVSSIAR MLRGEAGKRR AGAAGKAPEM VTMDLLGGCG GDAGGQDEVV DLEVKVPAGW ERRLDLLSGK TFLTPHRHQA AQDGQPDLNL PPTATTAPAA
101: AVTTCAAVCT LDMVRDALQR AAAARSARSP DTSSSSSAST SSSCPSLGKR SRSPPSSTAS PPANPAMRAS ACPSCLTYVL IAEADPRCPR CASKVPPLPT
201: KPAAHSSGKK PKIDLNAAAD ETE
101: AVTTCAAVCT LDMVRDALQR AAAARSARSP DTSSSSSAST SSSCPSLGKR SRSPPSSTAS PPANPAMRAS ACPSCLTYVL IAEADPRCPR CASKVPPLPT
201: KPAAHSSGKK PKIDLNAAAD ETE
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.