Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G034750.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | HORVU3Hr1G034750.5 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G480800.1 | Wheat | cytosol | 81.89 | 93.69 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 80.71 | 91.93 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 80.71 | 91.93 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 61.42 | 88.14 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 17.72 | 73.77 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 58.66 | 68.98 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 54.72 | 65.88 |
| OQU82335 | Sorghum | plastid | 57.09 | 50.88 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 35.04 | 41.59 |
| Solyc07g066570.2.1 | Tomato | cytosol | 31.1 | 41.58 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 34.25 | 40.65 |
| GSMUA_Achr11P... | Banana | cytosol | 37.01 | 39.0 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 34.25 | 38.67 |
| PGSC0003DMT400056874 | Potato | cytosol | 33.07 | 38.18 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.1 | 37.8 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 30.32 | 35.81 |
| AT1G79160.1 | Thale cress | cytosol | 31.89 | 33.89 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 29.13 | 33.64 |
| Bra026718.1-P | Field mustard | nucleus | 31.5 | 33.06 |
| CDY37016 | Canola | nucleus | 30.71 | 33.05 |
| CDX88511 | Canola | nucleus | 30.71 | 33.05 |
| CDX76373 | Canola | nucleus | 30.71 | 33.05 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 31.5 | 32.65 |
| Bra035096.1-P | Field mustard | nucleus | 29.92 | 32.62 |
| CDY51001 | Canola | nucleus | 31.1 | 32.38 |
| AT1G16500.1 | Thale cress | cytosol | 32.28 | 31.66 |
| CDX81765 | Canola | cytosol | 29.92 | 31.54 |
| KRH13717 | Soybean | nucleus | 31.1 | 31.47 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 29.92 | 31.02 |
| CDX79304 | Canola | cytosol | 27.17 | 30.53 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 29.13 | 30.2 |
| HORVU4Hr1G002540.1 | Barley | plastid | 28.74 | 21.79 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G104300.1 | EnsemblPlantsGene:HORVU2Hr1G104300 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | SEG:seg | UniParc:UPI000B485A88 |
| UniProt:A0A287J9P0 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:702602430..702604063
Molecular Weight (calculated)
26017.6 Da
IEP (calculated)
8.288
GRAVY (calculated)
-0.433
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: PISVLSAERQ SNTEKEEAEQ RTAEKKGKGR MAAEVSSIAR MLRGEAGKGG RAGAGKAPEM VTMDLLGGCG GDAGGEDEVV DLEVKVPAGW ERRLDLLSGK
101: TFLTPHRHQA AQDGHQDLNL PPTASTAPAA AAVTTCAAVC TLDMVRDALQ RAAAARSARS PDTSSSSSAS TSSSSPSLGK RSRSPPSSTA SPAANPAMRV
201: AACPSCLTYV LIAEADPRCP RCASKVPPLP GKPASSSSGK KPKIDLNAVA DETE
101: TFLTPHRHQA AQDGHQDLNL PPTASTAPAA AAVTTCAAVC TLDMVRDALQ RAAAARSARS PDTSSSSSAS TSSSSPSLGK RSRSPPSSTA SPAANPAMRV
201: AACPSCLTYV LIAEADPRCP RCASKVPPLP GKPASSSSGK KPKIDLNAVA DETE
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.