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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU3Hr1G034750.5

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G16500.1 HORVU3Hr1G034750.5 AT4G02150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G104270.1 Barley cytosol 55.92 66.67
TraesCS2B01G480800.1 Wheat cytosol 64.45 61.26
TraesCS2A01G459300.1 Wheat cytosol 64.45 60.99
Os04t0617700-01 Rice cytosol, plasma membrane, plastid 17.54 60.66
TraesCS2D01G459600.1 Wheat cytosol 63.98 60.54
HORVU2Hr1G104300.1 Barley cytosol, nucleus 65.88 54.72
Zm00001d002301_P001 Maize cytosol, nucleus, plastid 49.76 48.61
OQU82335 Sorghum plastid 47.87 35.44
GSMUA_Achr1P25720_001 Banana cytosol 30.81 30.37
Solyc07g066570.2.1 Tomato cytosol 27.01 30.0
GSMUA_Achr7P03500_001 Banana cytosol 30.33 29.91
GSMUA_Achr9P30650_001 Banana cytosol 30.33 28.44
GSMUA_Achr11P... Banana cytosol 32.23 28.22
VIT_19s0085g00030.t01 Wine grape cytosol 27.49 26.98
PGSC0003DMT400056874 Potato cytosol 27.96 26.82
GSMUA_AchrUn_... Banana cytosol 26.54 26.79
VIT_10s0092g00640.t01 Wine grape cytosol 27.01 25.91
Bra026718.1-P Field mustard nucleus 28.91 25.21
CDY51001 Canola nucleus 28.91 25.0
CDX81765 Canola cytosol 28.44 24.9
CDX79304 Canola cytosol 26.07 24.34
CDX88511 Canola nucleus 26.54 23.73
CDX76373 Canola nucleus 26.54 23.73
CDY37016 Canola nucleus 26.54 23.73
AT1G79160.1 Thale cress cytosol 26.54 23.43
AT1G16500.1 Thale cress cytosol 27.96 22.78
Bra035096.1-P Field mustard nucleus 25.12 22.75
KRH13717 Soybean nucleus 27.01 22.71
Bra026046.1-P Field mustard cytosol, nucleus, plastid 26.07 22.45
CDY68470 Canola cytosol, nucleus, plastid 25.12 21.63
CDY55881 Canola cytosol, nucleus, plastid 25.12 21.63
HORVU4Hr1G002540.1 Barley plastid 28.91 18.21
Protein Annotations
EnsemblPlants:HORVU0Hr1G005480.2EnsemblPlantsGene:HORVU0Hr1G005480PANTHER:PTHR33177PANTHER:PTHR33177:SF6SEG:segUniParc:UPI000B470CF1
UniProt:A0A287DWC8MapMan:35.2::::
Description
No Description!
Coordinates
chrchrUn:+:30466603..30467851
Molecular Weight (calculated)
22397.7 Da
IEP (calculated)
5.734
GRAVY (calculated)
-0.276
Length
211 amino acids
Sequence
(BLAST)
001: MVGGEMGKGD RSSTGKEPEM GTMDLLSGCG DEPDREDEVV DVEINVPAGW DRRLDLLKTF RNPHRHQVAQ DVPQDLKLPT TASTTPAVAA VTTYAAVYTI
101: DMVRNALQCA AARSARSPDM ASFSSASNSS PSSALGKRTR LPPSSMAPPT ANLAMHVVTC PSCLMYVLIA ETEPRCPRCA SKVPLLSTKP AANISGKKPI
201: IDLNVAADDT E
Best Arabidopsis Sequence Match ( AT1G16500.1 )
(BLAST)
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
Arabidopsis Description
>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.