Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76373 | Canola | nucleus | 62.39 | 59.75 |
| CDX88511 | Canola | nucleus | 62.39 | 59.75 |
| CDY37016 | Canola | nucleus | 62.39 | 59.75 |
| AT1G79160.1 | Thale cress | cytosol | 54.87 | 51.88 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 46.46 | 48.84 |
| Solyc07g066570.2.1 | Tomato | cytosol | 39.38 | 46.84 |
| CDY51001 | Canola | nucleus | 49.12 | 45.49 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 49.12 | 45.31 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 49.12 | 45.31 |
| CDX81765 | Canola | cytosol | 48.23 | 45.23 |
| PGSC0003DMT400056874 | Potato | cytosol | 42.48 | 43.64 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 11.06 | 40.98 |
| KRH13717 | Soybean | nucleus | 44.69 | 40.24 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 26.99 | 34.46 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 32.3 | 33.8 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 30.09 | 32.85 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 30.97 | 32.71 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 30.97 | 32.71 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 30.09 | 32.69 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.09 | 32.54 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 31.42 | 31.84 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 30.53 | 31.22 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 30.97 | 31.11 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 30.09 | 30.77 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 30.09 | 30.77 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 28.76 | 30.66 |
| TraesCS2B01G480800.1 | Wheat | cytosol | 30.09 | 30.63 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 30.09 | 30.49 |
| GSMUA_Achr11P... | Banana | cytosol | 31.42 | 29.46 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 29.65 | 29.0 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 30.53 | 27.17 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 24.34 | 26.07 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 25.22 | 25.56 |
| TraesCS4D01G015300.1 | Wheat | cytosol | 24.78 | 24.45 |
| OQU82335 | Sorghum | plastid | 30.53 | 24.21 |
| TraesCS4A01G296700.1 | Wheat | nucleus | 23.89 | 23.48 |
| Zm00001d033459_P001 | Maize | cytosol | 23.01 | 22.91 |
| EER91121 | Sorghum | cytosol | 24.34 | 22.82 |
| Zm00001d013615_P001 | Maize | cytosol | 23.01 | 22.71 |
| Os03t0660700-01 | Rice | nucleus | 18.58 | 21.88 |
| Zm00001d013614_P001 | Maize | cytosol | 6.64 | 19.48 |
| HORVU4Hr1G002540.1 | Barley | plastid | 23.01 | 15.52 |
Protein Annotations
| EnsemblPlants:CDX79304 | EnsemblPlantsGene:GSBRNA2T00131964001 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | ProteinID:CDX79304 | ProteinID:CDX79304.1 |
| SEG:seg | UniParc:UPI0004EB9C5A | MapMan:35.2 | : | : | : |
Description
BnaC06g19990D
Coordinates
chrLK031817:-:1196925..1197953
Molecular Weight (calculated)
25095.0 Da
IEP (calculated)
8.486
GRAVY (calculated)
-0.447
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRDLLGSGR DGGGGGGGDR SLELDVDLQV PTGWEKRLDL IVHFYCYLVK SNKQRDRFLD GWIDPCVVVF EQSGKVYLQR RSTSQTNQTV PTFQDLNIPP
101: RRSNSQAKPL LNLFDDTTPS FSDRPLSLSP NLSFQSVCTL DKVKSALERA KRDAVTTFKK RQSPDDDHHH SMMLEVASPV AAGCPGCLSY VLVMKNNPTC
201: PRCDTIVPLP SNSSIKKPKI DLNISI
101: RRSNSQAKPL LNLFDDTTPS FSDRPLSLSP NLSFQSVCTL DKVKSALERA KRDAVTTFKK RQSPDDDHHH SMMLEVASPV AAGCPGCLSY VLVMKNNPTC
201: PRCDTIVPLP SNSSIKKPKI DLNISI
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
Arabidopsis Description
>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.