Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G172000.1 | |
| TraesCS3B01G202800.2 | |
| TraesCS3D01G178500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | TraesCS3A01G172000.1 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | TraesCS3B01G202800.2 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | TraesCS3D01G178500.1 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G459300.1 | Wheat | cytosol | 95.95 | 95.52 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 94.59 | 94.17 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 84.23 | 84.62 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 83.33 | 83.71 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 93.69 | 81.89 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 75.23 | 80.68 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 19.37 | 70.49 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 65.77 | 67.59 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 61.26 | 64.45 |
| OQU82335 | Sorghum | plastid | 64.41 | 50.18 |
| Solyc07g066570.2.1 | Tomato | cytosol | 36.04 | 42.11 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 39.64 | 41.12 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 37.39 | 38.78 |
| PGSC0003DMT400056874 | Potato | cytosol | 38.29 | 38.64 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 38.29 | 37.78 |
| GSMUA_Achr11P... | Banana | cytosol | 40.09 | 36.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 34.68 | 36.84 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 33.78 | 34.88 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 32.88 | 33.18 |
| Bra026718.1-P | Field mustard | nucleus | 36.04 | 33.06 |
| AT1G79160.1 | Thale cress | cytosol | 35.59 | 33.05 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 36.04 | 32.65 |
| CDY37016 | Canola | nucleus | 34.68 | 32.63 |
| CDX88511 | Canola | nucleus | 34.68 | 32.63 |
| CDX76373 | Canola | nucleus | 34.68 | 32.63 |
| CDY51001 | Canola | nucleus | 35.59 | 32.38 |
| Bra035096.1-P | Field mustard | nucleus | 33.78 | 32.19 |
| CDX81765 | Canola | cytosol | 34.68 | 31.95 |
| AT1G16500.1 | Thale cress | cytosol | 36.94 | 31.66 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 31.53 | 31.39 |
| KRH13717 | Soybean | nucleus | 35.14 | 31.08 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 34.23 | 31.02 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 33.78 | 30.61 |
| CDX79304 | Canola | cytosol | 30.63 | 30.09 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G480800.1 | EnsemblPlantsGene:TraesCS2B01G480800 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2B:-:679030329..679031331
Molecular Weight (calculated)
22715.8 Da
IEP (calculated)
8.218
GRAVY (calculated)
-0.341
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEVSSIAR MLRGEAGKGR AGAGKAPEMV TMDLLGGCGS DAGGQDEVVD LEVKVPAGWE RRLDLLSGKT FLTPHRHQAA QDGHQDLNLP PTASTAPAAA
101: VTTCAAVCTL DMVRDALQRA AAARSARSPD TSSSSSASTS SSCPSLGKRS RSPPSSTASP PANPAMRASA CPSCLTYVLI AEADPRCPRC TSKVPPLPTK
201: PAAHNSGKKP KIDLNAAADE TE
101: VTTCAAVCTL DMVRDALQRA AAARSARSPD TSSSSSASTS SSCPSLGKRS RSPPSSTASP PANPAMRASA CPSCLTYVLI AEADPRCPRC TSKVPPLPTK
201: PAAHNSGKKP KIDLNAAADE TE
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
Arabidopsis Description
>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.