Factsheet for PGSC0003DMT400056874

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
plasma membrane 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018802
PGSC0003DMT400076768

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16500.1	PGSC0003DMT400018802	AT4G02150.1	21798944
AT1G16500.1	PGSC0003DMT400076768	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066570.2.1	Tomato	cytosol	61.82	71.58
VIT_19s0085g00030.t01	Wine grape	cytosol	60.0	61.4
KRH13717	Soybean	nucleus	57.73	50.6
AT1G79160.1	Thale cress	cytosol	51.82	47.7
Bra035096.1-P	Field mustard	nucleus	50.45	47.64
Bra026718.1-P	Field mustard	nucleus	50.91	46.28
CDX76373	Canola	nucleus	49.55	46.19
CDX88511	Canola	nucleus	49.55	46.19
CDY37016	Canola	nucleus	49.55	46.19
Os04t0617700-01	Rice	cytosol, plasma membrane, plastid	12.73	45.9
CDX81765	Canola	cytosol	49.55	45.23
CDY51001	Canola	nucleus	50.0	45.08
AT1G16500.1	Thale cress	cytosol	51.82	44.02
CDY55881	Canola	cytosol, nucleus, plastid	48.64	43.67
CDY68470	Canola	cytosol, nucleus, plastid	48.64	43.67
Bra026046.1-P	Field mustard	cytosol, nucleus, plastid	47.73	42.86
CDX79304	Canola	cytosol	43.64	42.48
GSMUA_Achr7P03500_001	Banana	cytosol	40.91	42.06
Zm00001d002301_P001	Maize	cytosol, nucleus, plastid	40.0	40.74
GSMUA_Achr1P25720_001	Banana	cytosol	39.09	40.19
GSMUA_AchrUn_...	Banana	cytosol	37.73	39.71
TraesCS2D01G459600.1	Wheat	cytosol	39.55	39.01
TraesCS2B01G480800.1	Wheat	cytosol	38.64	38.29
TraesCS2A01G459300.1	Wheat	cytosol	37.73	37.22
TraesCS2D01G459800.1	Wheat	nucleus	37.27	37.1
HORVU2Hr1G104270.1	Barley	cytosol	29.55	36.72
TraesCS2B01G481200.1	Wheat	cytosol	36.36	36.2
TraesCS2D01G459700.1	Wheat	cytosol	34.09	36.06
TraesCS2B01G480900.1	Wheat	cytosol	33.64	35.75
TraesCS2B01G481300.1	Wheat	cytosol	35.91	35.75
TraesCS2A01G459500.1	Wheat	cytosol	36.82	35.06
GSMUA_Achr9P30650_001	Banana	cytosol	35.45	34.67
GSMUA_Achr11P...	Banana	cytosol	37.73	34.44
TraesCS2A01G459400.1	Wheat	cytosol	32.73	33.96
HORVU2Hr1G104300.1	Barley	cytosol, nucleus	38.18	33.07
EER91121	Sorghum	cytosol	34.55	31.54
Zm00001d013614_P001	Maize	cytosol	10.91	31.17
Zm00001d013615_P001	Maize	cytosol	31.82	30.57
TraesCS4B01G017000.1	Wheat	nucleus	30.45	30.04
Zm00001d033459_P001	Maize	cytosol	30.91	29.96
TraesCS4D01G015300.1	Wheat	cytosol	30.91	29.69
OQU82335	Sorghum	plastid	38.18	29.47
TraesCS4A01G296700.1	Wheat	nucleus	30.0	28.7
HORVU0Hr1G005480.2	Barley	cytosol	26.82	27.96
Os03t0660700-01	Rice	nucleus	23.18	26.56
HORVU4Hr1G002540.1	Barley	plastid	29.09	19.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400056874	EnsemblPlantsGene:PGSC0003DMG400022120	EntrezGene:102578756	PANTHER:PTHR33177	PANTHER:PTHR33177:SF6	PGSC:PGSC0003DMG400022120
RefSeq:XP_006346032.1	SEG:seg	UniParc:UPI000294D187	UniProt:M1C007	MapMan:35.2	:

Description

YUP8H12R.23 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022120]

Coordinates

chr7:-:56597711..56599184

Molecular Weight (calculated)

24161.0 Da

IEP (calculated)

8.682

GRAVY (calculated)

-0.393

Length

220 amino acids

Sequence
(BLAST)

001: MAAEVSSLVR IMNAAAGASL NDSSPNLITM DLLGGCRSLD SKELDLDLQV PSGWEKRLDL KSGKVYLQRC NSSSKTLEQK QQTVRKLQDL NFPPTSKQPL
101: NLFDEPNLDL KLLLPSSSSY HSVCTLEKVK SALERAEKET TRKRSMSMSM SSSPTSNSSS SVKDTEINQE HTSTSFAAGC PSCLLYVLIS KNDPKCPRCH
201: TIVPLPVAMK KPRIDLNISI

Best Arabidopsis Sequence Match ( AT1G79160.1 )
(BLAST)

001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI

Arabidopsis Description

Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.