Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76373 | Canola | nucleus | 100.0 | 100.0 |
| CDY37016 | Canola | nucleus | 100.0 | 100.0 |
| Bra035096.1-P | Field mustard | nucleus | 89.83 | 90.99 |
| AT1G79160.1 | Thale cress | cytosol | 69.92 | 69.04 |
| CDX79304 | Canola | cytosol | 59.75 | 62.39 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 55.08 | 60.47 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 58.9 | 56.73 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 58.9 | 56.73 |
| CDX81765 | Canola | cytosol | 57.63 | 56.43 |
| CDY51001 | Canola | nucleus | 56.78 | 54.92 |
| Solyc07g066570.2.1 | Tomato | cytosol | 41.53 | 51.58 |
| PGSC0003DMT400056874 | Potato | cytosol | 46.19 | 49.55 |
| KRH13717 | Soybean | nucleus | 50.42 | 47.41 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 10.59 | 40.98 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 35.59 | 39.25 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 34.75 | 37.96 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.47 | 37.8 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 33.47 | 36.92 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 34.32 | 36.32 |
| TraesCS2B01G480800.1 | Wheat | cytosol | 32.63 | 34.68 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 32.63 | 34.53 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 32.63 | 34.22 |
| GSMUA_Achr11P... | Banana | cytosol | 34.75 | 34.02 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 25.42 | 33.9 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 31.36 | 33.48 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 31.36 | 33.48 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 29.24 | 33.33 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 29.24 | 33.17 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 30.93 | 33.03 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 28.81 | 32.08 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 31.36 | 32.03 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 33.05 | 30.71 |
| OQU82335 | Sorghum | plastid | 35.17 | 29.12 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 25.85 | 27.35 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 23.73 | 26.54 |
| EER91121 | Sorghum | cytosol | 26.69 | 26.14 |
| Zm00001d013614_P001 | Maize | cytosol | 8.47 | 25.97 |
| TraesCS4D01G015300.1 | Wheat | cytosol | 25.0 | 25.76 |
| TraesCS4A01G296700.1 | Wheat | nucleus | 25.0 | 25.65 |
| Zm00001d033459_P001 | Maize | cytosol | 24.58 | 25.55 |
| Zm00001d013615_P001 | Maize | cytosol | 24.58 | 25.33 |
| Os03t0660700-01 | Rice | nucleus | 18.22 | 22.4 |
| HORVU4Hr1G002540.1 | Barley | plastid | 23.31 | 16.42 |
Protein Annotations
| EnsemblPlants:CDX88511 | EnsemblPlantsGene:GSBRNA2T00148063001 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | ProteinID:CDX88511 | ProteinID:CDX88511.1 |
| ProteinID:CDY37016.1 | SEG:seg | UniParc:UPI0004EB9BC9 | UniProt:A0A078CMR6 | MapMan:35.2 | : |
Description
BnaC06g39550DBnaA04g25940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CMR6]
Coordinates
chrLK031855:-:1379552..1380533
Molecular Weight (calculated)
25354.9 Da
IEP (calculated)
9.065
GRAVY (calculated)
-0.564
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADVSSLVR LLNGYNDAKE SSGAKSTTAP MTRDLLGSSR GGGGGGGDRS LELDLDLQVP TGWEKRLDLK SGKVYLQRCN STSSSSITNA DQSNQTVPTT
101: TTSFQDLNLF PPNPTNSQAK PLLNLFDDTS PELKPLPPNR NFQSVCTLDK VKSALERAER DPVVLKKRQS PDDRHHHRGA EVASSSPVAA GCPGCLSYVL
201: VMKNNPRCPR CDTVVSLPTS SSSTKKKVKI DLNISI
101: TTSFQDLNLF PPNPTNSQAK PLLNLFDDTS PELKPLPPNR NFQSVCTLDK VKSALERAER DPVVLKKRQS PDDRHHHRGA EVASSSPVAA GCPGCLSYVL
201: VMKNNPRCPR CDTVVSLPTS SSSTKKKVKI DLNISI
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.