Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | CDX90948 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | CDX97257 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | CDY01921 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | CDY64806 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68470 | Canola | cytosol, nucleus, plastid | 97.55 | 97.55 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 79.59 | 79.59 |
| CDY51001 | Canola | nucleus | 66.53 | 66.8 |
| CDX81765 | Canola | cytosol | 64.9 | 65.98 |
| AT1G16500.1 | Thale cress | cytosol | 63.27 | 59.85 |
| CDX76373 | Canola | nucleus | 56.73 | 58.9 |
| CDX88511 | Canola | nucleus | 56.73 | 58.9 |
| CDY37016 | Canola | nucleus | 56.73 | 58.9 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 49.39 | 56.28 |
| Solyc07g066570.2.1 | Tomato | cytosol | 42.04 | 54.21 |
| CDX79304 | Canola | cytosol | 45.31 | 49.12 |
| PGSC0003DMT400056874 | Potato | cytosol | 43.67 | 48.64 |
| KRH13717 | Soybean | nucleus | 48.57 | 47.41 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 33.06 | 37.85 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 9.39 | 37.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.61 | 35.89 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 31.43 | 35.65 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 31.02 | 35.51 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 32.24 | 35.11 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 31.84 | 34.98 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 28.98 | 34.3 |
| TraesCS2B01G480800.1 | Wheat | cytosol | 31.02 | 34.23 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 24.49 | 33.9 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 28.57 | 33.65 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 30.61 | 33.63 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 30.2 | 33.48 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 29.39 | 32.58 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 29.39 | 32.58 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 28.16 | 32.55 |
| GSMUA_Achr11P... | Banana | cytosol | 31.43 | 31.95 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 29.8 | 31.6 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 31.02 | 29.92 |
| Zm00001d013615_P001 | Maize | cytosol | 25.71 | 27.51 |
| Zm00001d013614_P001 | Maize | cytosol | 8.57 | 27.27 |
| OQU82335 | Sorghum | plastid | 30.61 | 26.32 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 23.67 | 26.01 |
| Zm00001d033459_P001 | Maize | cytosol | 24.08 | 25.99 |
| EER91121 | Sorghum | cytosol | 25.31 | 25.73 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 21.63 | 25.12 |
| TraesCS4D01G015300.1 | Wheat | cytosol | 23.27 | 24.89 |
| TraesCS4A01G296700.1 | Wheat | nucleus | 23.27 | 24.78 |
| Os03t0660700-01 | Rice | nucleus | 18.37 | 23.44 |
| HORVU4Hr1G002540.1 | Barley | plastid | 22.45 | 16.42 |
Protein Annotations
| EnsemblPlants:CDY55881 | EnsemblPlantsGene:GSBRNA2T00017479001 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | ProteinID:CDY55881 | ProteinID:CDY55881.1 |
| SEG:seg | UniParc:UPI0004EEF90E | UniProt:A0A078IW62 | MapMan:35.2 | : | : |
Description
BnaCnng29510DBnaCnng29510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW62]
Coordinates
chrLK033436:-:12097..13051
Molecular Weight (calculated)
26369.1 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.442
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MTADVSSLVR LLSRYNDDRT TVKDSARQGS SVALMTRDLL GSGSCRGGGG GDQSLELDLD LKVPNGWEKR LDLKSGKVYL QQQNSTTSSH HRRAEQSNQT
101: FRKFQDLNFP SKSPVRPLLS LFDDTSLELK LVTSSSSSPA SSSSSSLCVS STSSSFQSVC TLDKVKSALE RAGRVSSGTL KKRKSPEEED VCDQTASTAA
201: SSPVAVGCPG CLSYVLVMKN DPKCPRCHSF VALPAVKRPK IDLNI
101: FRKFQDLNFP SKSPVRPLLS LFDDTSLELK LVTSSSSSPA SSSSSSLCVS STSSSFQSVC TLDKVKSALE RAGRVSSGTL KKRKSPEEED VCDQTASTAA
201: SSPVAVGCPG CLSYVLVMKN DPKCPRCHSF VALPAVKRPK IDLNI
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
Arabidopsis Description
>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.