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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68463
CDX70811
CDX70900
CDX74768
CDX75834
CDX76844
CDX77799
CDX79139
CDX82428
CDX82925
CDX88867
CDX89554
CDX90556
CDX92658
CDY03412
CDY06318
CDY06428
CDY06646
CDY09730
CDY10205
CDY11039
CDY17703
CDY18898
CDY20135
CDY21845
CDY27356
CDY27533
CDY32901
CDY34317
CDY34804
CDY37068
CDY37307
CDY38933
CDY40150
CDY42320
CDY44955
CDY51233
CDY52493
CDY53983
CDY60454
CDY66886
CDY70544
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02150.1 CDY06646 AT1G06510.1 21798944
AT4G02150.1 CDY10205 AT1G06510.1 21798944
AT4G02150.1 CDY40150 AT1G52560.1 21798944
AT4G02150.1 CDY66886 AT1G52560.1 21798944
AT4G02150.1 CDX89554 AT2G23290.1 21798944
AT4G02150.1 CDY38933 AT2G23290.1 21798944
AT4G02150.1 CDX76844 AT2G24020.1 21798944
AT4G02150.1 CDY34804 AT2G24020.1 21798944
AT4G02150.1 CDX74768 AT2G45820.1 21798944
AT4G02150.1 CDY06318 AT2G45820.1 21798944
AT4G02150.1 CDY18898 AT2G45820.1 21798944
AT4G02150.1 CDY27356 AT2G45820.1 21798944
AT4G02150.1 CDY37068 AT2G45820.1 21798944
AT4G02150.1 CDX75834 AT3G15540.1 21798944
AT4G02150.1 CDX82428 AT3G15540.1 21798944
AT4G02150.1 CDY20135 AT3G15540.1 21798944
AT4G02150.1 CDY21845 AT3G15540.1 21798944
AT4G02150.1 CDY71748 AT3G15540.1 21798944
AT4G02150.1 CDY06428 AT3G21215.1 21798944
AT4G02150.1 CDY27533 AT3G21215.1 21798944
AT4G02150.1 CDY37307 AT3G21215.1 21798944
AT4G02150.1 CDX68463 AT3G48550.1 21798944
AT4G02150.1 CDY60454 AT3G48550.1 21798944
AT4G02150.1 CDY70544 AT3G48550.1 21798944
AT4G02150.1 CDX90556 AT4G15900.1 9765207
AT4G02150.1 CDY09730 AT4G15900.1 9765207
AT4G02150.1 CDX79139 AT4G22240.1 21798944
AT4G02150.1 CDX82925 AT4G22240.1 21798944
AT4G02150.1 CDX70811 AT4G24840.1 21798944
AT4G02150.1 CDX92658 AT4G24840.1 21798944
AT4G02150.1 CDY03412 AT4G24840.1 21798944
AT4G02150.1 CDY11039 AT4G24840.1 21798944
AT4G02150.1 CDY34317 AT4G24840.1 21798944
AT4G02150.1 CDY51233 AT4G24840.1 21798944
AT4G02150.1 CDX70900 AT5G19960.1 21798944
AT4G02150.1 CDX88867 AT5G19960.1 21798944
AT4G02150.1 CDY42320 AT5G19960.1 21798944
AT4G02150.1 CDY44955 AT5G19960.1 21798944
AT4G02150.1 CDX77799 AT5G47810.1 21798944
AT4G02150.1 CDY17703 AT5G47810.1 21798944
AT4G02150.1 CDY32901 AT5G57120.1 21798944
AT4G02150.1 CDY52493 AT5G57120.1 21798944
AT4G02150.1 CDY53983 AT5G57120.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000891.1-P Field mustard cytosol 99.42 99.42
CDY64806 Canola cytosol 96.14 96.14
CDX97257 Canola cytosol 80.12 78.15
CDY01921 Canola cytosol 79.92 77.97
AT4G02150.1 Thale cress cytosol 75.87 74.01
VIT_07s0005g01100.t01 Wine grape cytosol 69.69 68.24
Solyc06g009750.2.1 Tomato nucleus 67.95 66.79
PGSC0003DMT400018802 Potato cytosol 67.95 66.79
CDY22779 Canola cytosol 68.73 66.67
CDY52043 Canola cytosol 68.53 66.48
CDY09716 Canola cytosol 67.95 65.79
CDY34430 Canola cytosol 66.99 65.47
CDY32215 Canola cytosol 66.8 65.28
CDX90544 Canola cytosol 67.76 65.0
KXG32187 Sorghum cytosol 66.22 64.96
TraesCS3A01G172000.1 Wheat golgi, nucleus 65.64 64.89
TraesCS3D01G178500.1 Wheat cytosol 65.64 64.89
Zm00001d040274_P001 Maize cytosol 66.22 64.84
Os01t0253300-01 Rice cytosol 65.64 64.64
Zm00001d008345_P003 Maize cytosol 65.44 63.96
HORVU3Hr1G034750.5 Barley cytosol 65.64 63.79
CDX89948 Canola cytosol 63.71 63.34
TraesCS3B01G202800.2 Wheat cytosol 64.29 62.01
CDX93514 Canola cytosol 62.36 59.59
CDX94988 Canola cytosol 61.97 59.44
CDY32165 Canola cytosol 62.16 59.41
CDY31102 Canola plasma membrane 62.16 59.41
CDY05638 Canola cytosol 57.34 55.72
CDY33917 Canola cytosol 56.56 55.08
CDY27746 Canola cytosol 52.51 50.18
CDY05194 Canola cytosol 51.93 50.09
CDY15260 Canola cytosol 64.48 43.1
CDY32170 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 14.09 40.33
PGSC0003DMT400076768 Potato cytosol, extracellular, mitochondrion, plastid 5.6 32.58
CDY04878 Canola plastid 27.41 27.26
CDY55698 Canola cytosol, plastid 27.03 26.92
CDY10407 Canola cytosol 24.32 25.51
CDX70330 Canola cytosol, extracellular 12.55 24.9
Protein Annotations
Gene3D:1.20.5.690Gene3D:1.25.10.10MapMan:23.5.1.3GO:A0A078DUQ6InterPro:ARM-likeInterPro:ARM-type_fold
InterPro:Arm_3InterPro:ArmadilloEnsemblPlants:CDX90948ProteinID:CDX90948ProteinID:CDX90948.1GO:GO:0003674
GO:GO:0005215GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0006606GO:GO:0006810GO:GO:0008150GO:GO:0008565
GO:GO:0061608EnsemblPlantsGene:GSBRNA2T00151695001InterPro:IPR000225InterPro:IPR002652InterPro:IPR011989InterPro:IPR036975
InterPro:Importin-a_IBBInterPro:Importin-a_IBB_sfInterPro:Importing_su_alphaPFAM:PF00514PFAM:PF01749PFAM:PF16186
PIRSF:PIRSF005673PFscan:PS50176PFscan:PS51214PANTHER:PTHR23316PANTHER:PTHR23316:SF53SMART:SM00185
SUPFAM:SSF48371UniParc:UPI0004EF4438SEG:seg:::
Description
BnaA03g26280D
Coordinates
chrLK031864:+:1491008..1493777
Molecular Weight (calculated)
57474.5 Da
IEP (calculated)
4.719
GRAVY (calculated)
-0.183
Length
518 amino acids
Sequence
(BLAST)
001: MSLRPGAKTE ARRSRYKVAV DAEEGRRRRE DHMVEIRKNK REENLQKRRR EGISAAAQTE QDLTYEKRLI ENLQGIVAGI WSEDSNLQLE TTTLLRKLLS
101: REHYPPINDV IQSGVVPRVV TFLSRAEFPK LQFEAAWTLT NIASGTSENT NVIIESGAIP IFVHLLSSPN EDVREQAVWA LGNVAGDSPK CRDFVLSFGA
201: MLPLLSQFNK HAKLSMLRNA TWTLSNFCRG KPQPSFEQTS QALPVLKSLV QSTDEEVLTD ACWTLAHLSD NTNETIQAVI DAGVVPRIIQ LLAHTSPAVL
301: IPALRTIGNL VTGDEVQTQT VVDHQVLPSL LVLVTNTYAK SIKKEACWTI SNITAGSSNQ IQAAIEVGVI QVLVWVLQNA EFEVKREAAW GISNATSGGT
401: HDQIKFMVSV GCIRPICDLL TCPDPRIIMV CLEALENILK VGEAVKSSGL TGDENLFGIL VEDAGGLEKI ENLQSHDNDD IYQKAMKILE EFWTEDDDEE
501: EGNNEIPDIT PPDLFNFI
Best Arabidopsis Sequence Match ( AT4G02150.1 )
(BLAST)
001: MSLRPSAKTE VRRNRYKVAV DAEEGRRRRE DNLVEIRKNK REENLQKKRF TSSMAFGSAT GQTEQDLSSA NQLKDNLPAM VAGIWSEDSN SQLEATNLLR
101: KLLSIEQNPP INEVVQSGVV PRVVKFLSRD DFPKLQFEAA WALTNIASGT SENTNVIIES GAVPIFIQLL SSASEDVREQ AVWALGNVAG DSPKCRDLVL
201: SYGAMTPLLS QFNENTKLSM LRNATWTLSN FCRGKPPPAF EQTQPALPVL ERLVQSMDEE VLTDACWALS YLSDNSNDKI QAVIEAGVVP RLIQLLGHSS
301: PSVLIPALRT IGNIVTGDDL QTQMVLDQQA LPCLLNLLKN NYKKSIKKEA CWTISNITAG NADQIQAVID AGIIQSLVWV LQSAEFEVKK EAAWGISNAT
401: SGGTHDQIKF MVSQGCIKPL CDLLTCPDLK VVTVCLEALE NILVVGEAEK NLGHTGEDNL YAQMIDEAEG LEKIENLQSH DNNDIYDKAV KILETFWTED
501: NEEEGNDENH APQSGFQFGS TNVPPGQFNF I
Arabidopsis Description
IMPA3Importin subunit alpha-3 [Source:UniProtKB/Swiss-Prot;Acc:O04294]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.