Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G48550.1 | CDX70076 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | CDX78884 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | CDX81016 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | CDX98948 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | CDY55775 | AT5G06710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018049.1-P | Field mustard | nucleus | 94.9 | 92.55 |
| CDY60454 | Canola | nucleus | 89.81 | 85.98 |
| AT3G48550.1 | Thale cress | nucleus | 85.99 | 85.44 |
| CDX68463 | Canola | cytosol, mitochondrion, nucleus | 85.35 | 81.71 |
| KRH03966 | Soybean | cytosol | 56.05 | 57.14 |
| KRH57236 | Soybean | cytosol | 55.41 | 56.86 |
| VIT_17s0000g01360.t01 | Wine grape | cytosol, mitochondrion, nucleus | 56.69 | 52.66 |
| PGSC0003DMT400046599 | Potato | nucleus | 54.14 | 50.3 |
| Solyc03g112920.1.1 | Tomato | nucleus | 54.78 | 48.86 |
| GSMUA_Achr6P20920_001 | Banana | cytosol, mitochondrion, nucleus | 45.86 | 48.32 |
| GSMUA_Achr6P06410_001 | Banana | nucleus | 42.04 | 44.59 |
| Zm00001d016564_P001 | Maize | cytosol | 43.95 | 40.83 |
| EES05120 | Sorghum | cytosol | 45.86 | 40.22 |
| Os04t0386300-01 | Rice | cytosol, mitochondrion, plastid | 33.12 | 38.52 |
| TraesCS2A01G282700.1 | Wheat | cytosol | 42.04 | 36.67 |
| EES12026 | Sorghum | cytosol, plastid, vacuole | 42.68 | 33.84 |
| TraesCS2B01G300000.1 | Wheat | cytosol | 38.22 | 33.33 |
| Zm00001d003978_P001 | Maize | cytosol | 38.85 | 32.62 |
| TraesCS2D01G281400.1 | Wheat | cytosol | 35.67 | 30.77 |
Protein Annotations
| EnsemblPlants:CDY70544 | EnsemblPlantsGene:GSBRNA2T00004176001 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 |
| GO:GO:0009630 | ncoils:Coil | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF2 | ProteinID:CDY70544 | ProteinID:CDY70544.1 |
| SEG:seg | UniParc:UPI0004EDC0DF | UniProt:A0A078JUP8 | MapMan:35.2 | : | : |
Description
BnaUnng03910DBnaUnng03910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUP8]
Coordinates
chrLK042443:+:2344..3041
Molecular Weight (calculated)
18297.9 Da
IEP (calculated)
8.533
GRAVY (calculated)
-0.732
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQQQQHDH HKELQLLPSP LSTESPVRTL LPTVTTTDHH HSSSMFHHDL DLKLSISLST IPTATRWRRG GVEALKWQAA EQIRLAAIEK AYAERVRELT
101: RREMEMAQSE FARARVMWQK AREEVERAER LKERSMTKID TACLEITCHS CSQRFRP
101: RREMEMAQSE FARARVMWQK AREEVERAER LKERSMTKID TACLEITCHS CSQRFRP
001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
Arabidopsis Description
At3g48550 [Source:UniProtKB/TrEMBL;Acc:Q9SMP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.