Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70544 | Canola | nucleus | 85.44 | 85.99 |
| Bra018049.1-P | Field mustard | nucleus | 84.81 | 83.23 |
| Bra029904.1-P | Field mustard | nucleus | 86.08 | 82.93 |
| CDY60454 | Canola | nucleus | 86.08 | 82.93 |
| CDX68463 | Canola | cytosol, mitochondrion, nucleus | 82.91 | 79.88 |
| KRH03966 | Soybean | cytosol | 56.33 | 57.79 |
| KRH57236 | Soybean | cytosol | 55.7 | 57.52 |
| VIT_17s0000g01360.t01 | Wine grape | cytosol, mitochondrion, nucleus | 57.59 | 53.85 |
| PGSC0003DMT400046599 | Potato | nucleus | 53.16 | 49.7 |
| Solyc03g112920.1.1 | Tomato | nucleus | 54.43 | 48.86 |
| GSMUA_Achr6P20920_001 | Banana | cytosol, mitochondrion, nucleus | 44.94 | 47.65 |
| GSMUA_Achr6P06410_001 | Banana | nucleus | 41.77 | 44.59 |
| Zm00001d016564_P001 | Maize | cytosol | 44.3 | 41.42 |
| EES05120 | Sorghum | cytosol | 46.2 | 40.78 |
| Os04t0386300-01 | Rice | cytosol, mitochondrion, plastid | 32.28 | 37.78 |
| TraesCS2A01G282700.1 | Wheat | cytosol | 41.77 | 36.67 |
| EES12026 | Sorghum | cytosol, plastid, vacuole | 43.67 | 34.85 |
| TraesCS2B01G300000.1 | Wheat | cytosol | 37.97 | 33.33 |
| Zm00001d003978_P001 | Maize | cytosol | 38.61 | 32.62 |
| TraesCS2D01G281400.1 | Wheat | cytosol | 35.44 | 30.77 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824014 | UniProt:A0A178VHF7 | ProteinID:AEE78429.1 | ArrayExpress:AT3G48550 | EnsemblPlantsGene:AT3G48550 |
| RefSeq:AT3G48550 | TAIR:AT3G48550 | RefSeq:AT3G48550-TAIR-G | EnsemblPlants:AT3G48550.1 | TAIR:AT3G48550.1 | EMBL:AY086607 |
| EMBL:BT024699 | ProteinID:CAB62344.1 | ncoils:Coil | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 |
| GO:GO:0009628 | GO:GO:0009630 | RefSeq:NP_190424.1 | ProteinID:OAP04332.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF2 | UniProt:Q9SMP3 | UniParc:UPI00000A6958 | SEG:seg |
Description
At3g48550 [Source:UniProtKB/TrEMBL;Acc:Q9SMP3]
Coordinates
chr3:+:17993819..17994779
Molecular Weight (calculated)
18353.9 Da
IEP (calculated)
8.151
GRAVY (calculated)
-0.840
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.