Factsheet for Bra029904.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005907.1-P
Bra009219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48550.1	Bra005907.1-P	AT5G06710.1	21798944
AT3G48550.1	Bra009219.1-P	AT5G06710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60454	Canola	nucleus	100.0	100.0
Bra018049.1-P	Field mustard	nucleus	89.63	91.3
AT3G48550.1	Thale cress	nucleus	82.93	86.08
KRH57236	Soybean	cytosol	53.66	57.52
KRH03966	Soybean	cytosol	53.66	57.14
VIT_17s0000g01360.t01	Wine grape	cytosol, mitochondrion, nucleus	54.88	53.25
PGSC0003DMT400046599	Potato	nucleus	51.83	50.3
Solyc03g112920.1.1	Tomato	nucleus	53.05	49.43
GSMUA_Achr6P20920_001	Banana	cytosol, mitochondrion, nucleus	43.9	48.32
GSMUA_Achr6P06410_001	Banana	nucleus	42.07	46.62
Zm00001d016564_P001	Maize	cytosol	42.07	40.83
EES05120	Sorghum	cytosol	43.29	39.66
Os04t0386300-01	Rice	cytosol, mitochondrion, plastid	31.1	37.78
TraesCS2A01G282700.1	Wheat	cytosol	40.85	37.22
TraesCS2B01G300000.1	Wheat	cytosol	37.2	33.89
EES12026	Sorghum	cytosol, plastid, vacuole	40.24	33.33
Zm00001d003978_P001	Maize	cytosol	37.2	32.62
TraesCS2D01G281400.1	Wheat	cytosol	34.76	31.32

Protein Annotations

EnsemblPlants:Bra029904.1	EnsemblPlants:Bra029904.1-P	EnsemblPlantsGene:Bra029904	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009630	ncoils:Coil	PANTHER:PTHR34946	PANTHER:PTHR34946:SF2	SEG:seg
UniParc:UPI0002543F4C	UniProt:M4EM84	MapMan:35.2	:	:	:

Description

AT3G48550 (E=2e-067) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G01940.3); Has 40 Blast hits to 40 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA01:+:14681617..14682177

Molecular Weight (calculated)

18818.5 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.725

Length

164 amino acids

Sequence
(BLAST)

001: MAEQQQQEDH HKELQLLPSP PSTESRVRKL RPTVITTDHH HSPSMIHQDL DLKLSISLST IPTATVEHLS DGGGGVGGVE ALKWQAAEQI RLAAIEKAYA
101: ERVRELTRRE MEMAQAEFAR ARVMWQKARE EVERAERLKE RSMTKIDTTC LEITCHSCRQ RFRP

Best Arabidopsis Sequence Match ( AT3G48550.1 )
(BLAST)

001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP

Arabidopsis Description

At3g48550 [Source:UniProtKB/TrEMBL;Acc:Q9SMP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.