Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr6P06410_001 | Banana | nucleus | 65.77 | 66.22 |
VIT_17s0000g01360.t01 | Wine grape | cytosol, mitochondrion, nucleus | 55.7 | 49.11 |
KRH57236 | Soybean | cytosol | 50.34 | 49.02 |
KRH03966 | Soybean | cytosol | 50.34 | 48.7 |
Zm00001d016564_P001 | Maize | cytosol | 53.02 | 46.75 |
CDY70544 | Canola | nucleus | 48.32 | 45.86 |
AT3G48550.1 | Thale cress | nucleus | 47.65 | 44.94 |
Bra018049.1-P | Field mustard | nucleus | 48.32 | 44.72 |
Os04t0386300-01 | Rice | cytosol, mitochondrion, plastid | 40.27 | 44.44 |
CDY60454 | Canola | nucleus | 48.32 | 43.9 |
Bra029904.1-P | Field mustard | nucleus | 48.32 | 43.9 |
PGSC0003DMT400046599 | Potato | nucleus | 49.66 | 43.79 |
Solyc03g112920.1.1 | Tomato | nucleus | 51.01 | 43.18 |
TraesCS2A01G282700.1 | Wheat | cytosol | 51.68 | 42.78 |
CDX68463 | Canola | cytosol, mitochondrion, nucleus | 46.98 | 42.68 |
TraesCS2B01G300000.1 | Wheat | cytosol | 50.34 | 41.67 |
EES05120 | Sorghum | cytosol | 48.99 | 40.78 |
TraesCS2D01G281400.1 | Wheat | cytosol | 48.32 | 39.56 |
Zm00001d003978_P001 | Maize | cytosol | 46.98 | 37.43 |
EES12026 | Sorghum | cytosol, plastid, vacuole | 48.99 | 36.87 |
Protein Annotations
EnsemblPlants:GSMUA_Achr6P20920_001 | EnsemblPlants:GSMUA_Achr6T20920_001 | EnsemblPlantsGene:GSMUA_Achr6G20920_001 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 |
GO:GO:0009628 | GO:GO:0009630 | ncoils:Coil | PANTHER:PTHR34946 | SEG:seg | UniParc:UPI000296861B |
UniProt:M0T8U0 | MapMan:35.2 | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G20920_001]
Coordinates
chr6:-:16168827..16169276
Molecular Weight (calculated)
17096.1 Da
IEP (calculated)
6.128
GRAVY (calculated)
-0.750
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDDQRELR LLLSSSTRPP SHAPKSSAGT DTSDHPLLDL NLSMSISTLQ PSATEESHGY ARSLQLLKQQ TAEQIRLAAV ENAYAEQIRE LTRRELELAE
101: QEFARAQLVW ERAREEVKKA ERMKEIATRR INSACLEITC YSCHQRFRP
101: QEFARAQLVW ERAREEVKKA ERMKEIATRR INSACLEITC YSCHQRFRP
001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
Arabidopsis Description
At3g48550 [Source:UniProtKB/TrEMBL;Acc:Q9SMP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.