Factsheet for GSMUA_Achr8P22800_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P32300_001
GSMUA_Achr4P08690_001
GSMUA_Achr4P09160_001
GSMUA_Achr5P09640_001
GSMUA_Achr6P35790_001
GSMUA_Achr7P24210_001
GSMUA_Achr8P24940_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	GSMUA_Achr3P32300_001	AT4G26100.1	21798944
AT5G06710.1	GSMUA_Achr4P08690_001	AT4G26100.1	21798944
AT5G06710.1	GSMUA_Achr4P09160_001	AT4G26100.1	21798944
AT5G06710.1	GSMUA_Achr5P09640_001	AT4G26100.1	21798944
AT5G06710.1	GSMUA_Achr6P35790_001	AT4G26100.1	21798944
AT5G06710.1	GSMUA_Achr7P24210_001	AT4G26100.1	21798944
AT5G06710.1	GSMUA_Achr8P24940_001	AT4G26100.1	21798944
AT5G06710.1	GSMUA_AchrUn_...	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0447000-00	Rice	nucleus	29.06	85.56
GSMUA_Achr3P07740_001	Banana	nucleus	42.64	58.25
GSMUA_Achr4P06480_001	Banana	nucleus	30.57	48.8
GSMUA_Achr11P...	Banana	nucleus	41.51	44.53
GSMUA_AchrUn_...	Banana	nucleus	35.09	42.66
GSMUA_Achr7P15910_001	Banana	nucleus	24.53	42.21
GSMUA_Achr7P02380_001	Banana	nucleus	45.66	42.01
GSMUA_Achr4P21600_001	Banana	nucleus	43.02	41.16
KRH67080	Soybean	nucleus	44.53	40.97
GSMUA_Achr9P15710_001	Banana	nucleus	47.92	40.71
GSMUA_Achr2P10040_001	Banana	nucleus	44.53	40.41
CDX81016	Canola	nucleus	39.62	40.38
KRG95402	Soybean	nucleus, plastid	44.15	40.07
GSMUA_Achr3P15190_001	Banana	nucleus	35.47	39.66
GSMUA_Achr4P13440_001	Banana	nucleus	33.96	39.65
GSMUA_Achr1P01670_001	Banana	nucleus	44.15	39.39
GSMUA_Achr5P13530_001	Banana	nucleus	41.13	39.07
VIT_08s0007g06670.t01	Wine grape	nucleus	47.55	38.07
GSMUA_Achr10P...	Banana	nucleus	25.66	37.36
GSMUA_Achr9P09800_001	Banana	nucleus	33.96	37.34
KRH71831	Soybean	plastid	45.66	36.78
KRH38083	Soybean	nucleus	45.28	36.7
GSMUA_Achr7P27530_001	Banana	nucleus	35.47	36.58
GSMUA_Achr7P06950_001	Banana	nucleus	24.91	36.46
Zm00001d020670_P001	Maize	nucleus	45.66	36.34
GSMUA_Achr1P04360_001	Banana	nucleus	40.75	35.76
VIT_13s0156g00260.t01	Wine grape	nucleus	48.3	35.75
GSMUA_Achr9P26300_001	Banana	nucleus	34.72	35.66
GSMUA_AchrUn_...	Banana	nucleus	36.98	35.51
GSMUA_Achr7P05000_001	Banana	nucleus	24.91	35.48
AT5G06710.1	Thale cress	nucleus	44.91	35.42
Bra005907.1-P	Field mustard	nucleus	43.02	35.4
Zm00001d005875_P001	Maize	nucleus	43.4	35.38
GSMUA_Achr4P01350_001	Banana	nucleus	33.96	35.29
Bra009219.1-P	Field mustard	nucleus	45.28	35.29
CDX70076	Canola	nucleus	45.28	35.29
GSMUA_Achr8P26480_001	Banana	nucleus	37.36	35.23
CDX98948	Canola	nucleus	44.53	34.81
CDY55775	Canola	nucleus	42.26	34.78
GSMUA_Achr2P04490_001	Banana	nucleus	29.81	34.65
GSMUA_AchrUn_...	Banana	plastid	40.75	34.62
TraesCS5D01G235300.1	Wheat	nucleus	44.15	34.51
GSMUA_Achr8P05100_001	Banana	nucleus	36.23	33.8
TraesCS5B01G231300.1	Wheat	nucleus	45.28	33.8
EER98990	Sorghum	nucleus	46.42	33.33
TraesCS5A01G232700.1	Wheat	nucleus	44.15	33.33
Solyc01g073910.2.1	Tomato	nucleus	45.66	33.15
GSMUA_Achr1P10390_001	Banana	nucleus	28.68	32.76
GSMUA_Achr6P30180_001	Banana	nucleus	30.94	32.54
Solyc10g080540.1.1	Tomato	nucleus	43.4	32.49
PGSC0003DMT400060951	Potato	nucleus	43.02	32.48
PGSC0003DMT400016146	Potato	nucleus	45.66	32.44
GSMUA_Achr6P31710_001	Banana	nucleus	34.34	31.82
KXG25294	Sorghum	nucleus	44.91	31.15
KRH43419	Soybean	nucleus	44.15	31.03
KRH13873	Soybean	nucleus	43.77	30.21
HORVU5Hr1G067010.2	Barley	nucleus	43.4	29.26
Zm00001d031745_P001	Maize	plastid	45.66	27.31
CDX78884	Canola	nucleus	24.53	25.79

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr8G22800_001	EnsemblPlants:GSMUA_Achr8P22800_001	EnsemblPlants:GSMUA_Achr8T22800_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0TST3	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF105	SMART:SM00340	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000295A0CF	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G22800_001]

Coordinates

chr8:-:27348252..27358150

Molecular Weight (calculated)

29799.3 Da

IEP (calculated)

9.418

GRAVY (calculated)

-0.777

Length

265 amino acids

Sequence
(BLAST)

001: MTKERNKSLQ PKEGDMNLGR DARTYLEANV ECSDSPVSNF VVVTAILPGG RGCGTTKGLL TDHWVRWRER ERERERADKM WVGVVQASSR VSDEEENGLV
101: RKKLRLSKEQ SDSLEESFKE HSTLNPKQKL ALSEQLNLRP RQVEVWFQNR RARTKLKQTE VHCEYLNRCC QTLMEENRRL QKKVAELRAL QTSCHDFSMH
201: LPATTLSMCP SCERVAPTPT SNSASAAAAS DHQPNSFSAL IPKPRPSSLA VQPAPAASRQ SSPAS

Best Arabidopsis Sequence Match ( AT2G44910.1 )
(BLAST)

001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR

Arabidopsis Description

ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.