Factsheet for Solyc10g080540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090460.2.1
Solyc02g063520.2.1
Solyc02g091930.2.1
Solyc03g121820.2.1
Solyc05g016410.2.1
Solyc06g062790.2.1
Solyc07g040720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	Solyc01g090460.2.1	AT3G60390.1	21798944
AT5G06710.1	Solyc03g121820.2.1	AT4G26100.1	21798944
AT5G06710.1	Solyc05g016410.2.1	AT4G26100.1	21798944
AT5G06710.1	Solyc06g062790.2.1	AT4G26100.1	21798944
AT5G06710.1	Solyc07g040720.2.1	AT4G26100.1	21798944
AT5G06710.1	Solyc02g063520.2.1	AT4G37790.1	21798944
AT5G06710.1	Solyc02g091930.2.1	AT4G37790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060951	Potato	nucleus	92.09	92.88
Os09t0447000-00	Rice	nucleus	22.88	90.0
GSMUA_Achr3P07740_001	Banana	nucleus	31.36	57.22
GSMUA_Achr7P02380_001	Banana	nucleus	39.55	48.61
CDX81016	Canola	nucleus	35.31	48.08
Solyc02g091930.2.1	Tomato	nucleus	35.31	46.64
Solyc02g063520.2.1	Tomato	nucleus	33.05	46.43
AT5G06710.1	Thale cress	nucleus	43.79	46.13
CDX98948	Canola	nucleus	44.07	46.02
Bra009219.1-P	Field mustard	nucleus	44.07	45.88
CDX70076	Canola	nucleus	44.07	45.88
Bra005907.1-P	Field mustard	nucleus	41.53	45.65
GSMUA_Achr9P15710_001	Banana	nucleus	40.11	45.51
Solyc01g073910.2.1	Tomato	nucleus	46.89	45.48
Solyc05g008050.1.1	Tomato	nucleus	26.84	45.45
Solyc08g007270.2.1	Tomato	nucleus	35.03	45.09
CDY55775	Canola	nucleus	40.96	45.03
Solyc08g078300.2.1	Tomato	nucleus	35.31	44.64
Zm00001d020670_P001	Maize	nucleus	41.53	44.14
Zm00001d005875_P001	Maize	nucleus	40.11	43.69
GSMUA_Achr8P22800_001	Banana	nucleus	32.49	43.4
TraesCS5D01G235300.1	Wheat	nucleus	40.96	42.77
Solyc01g090460.2.1	Tomato	nucleus	34.18	42.31
Solyc06g060830.2.1	Tomato	nucleus	35.59	42.28
TraesCS5A01G232700.1	Wheat	nucleus	40.96	41.31
CDX78884	Canola	nucleus	29.1	40.87
TraesCS5B01G231300.1	Wheat	nucleus	40.96	40.85
EER98990	Sorghum	nucleus	42.09	40.38
Solyc07g054380.1.1	Tomato	nucleus	23.16	39.61
KXG25294	Sorghum	nucleus	41.81	38.74
Solyc04g077220.2.1	Tomato	nucleus	28.25	37.88
HORVU5Hr1G067010.2	Barley	nucleus	40.96	36.9
Zm00001d031745_P001	Maize	plastid	41.81	33.41

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4D2U4
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF105	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc10g080540.1	EnsemblPlants:Solyc10g080540.1.1
UniParc:UPI00027694B4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:61784489..61787423

Molecular Weight (calculated)

39811.3 Da

IEP (calculated)

8.744

GRAVY (calculated)

-0.666

Length

354 amino acids

Sequence
(BLAST)

001: MELALSLGGD NTPKPILFLE KSSSSSSSLH ENKVNKDVGF CMVLGKSCNE VERKKRSKKH QEIRSSSIDP SLQLDLIPFS HGVSYNTCSK LSFPWLSQNL
101: ATHEPAGLTN GPALDMTNRM QLVVAEEAEE GAALSSPNSE ISNFQMNFPI YRNGKLINTK RDQCERDRDN NRWGNGNNYS CSRISDEELD ASARKKLRLT
201: KEQSAFLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK KCCETLTEEN KRLHKELQEL RALKSSQPFY MQLPATTLTM
301: CPSCERVATT TSVTTTTTTT TPATTTTTTV AASNAVALHN HKLISVMTKL ECTN

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.