Factsheet for Solyc07g040720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097790.2.1
Solyc06g074500.1.1
Solyc11g066930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	Solyc06g074500.1.1	AT2G27770.1	21798944
AT1G72710.1	Solyc11g066930.1.1	AT2G27770.1	21798944
AT4G26100.1	Solyc01g097790.2.1	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082747	Potato	cytosol	98.09	98.09
Solyc05g016410.2.1	Tomato	cytosol, nucleus	87.92	88.49
Bra035646.1-P	Field mustard	cytosol	61.02	80.0
Solyc03g121820.2.1	Tomato	cytosol, nucleus	77.54	77.87
CDX96430	Canola	cytosol	76.69	77.85
Bra016039.1-P	Field mustard	cytosol	76.69	77.85
EES01354	Sorghum	cytosol	77.33	77.66
HORVU3Hr1G066800.6	Barley	cytosol	77.33	77.0
AT1G72710.1	Thale cress	cytosol	75.85	76.99
CDY49859	Canola	cytosol	75.85	76.99
CDY11892	Canola	cytosol	69.92	76.74
Bra008043.1-P	Field mustard	cytosol	75.42	76.56
CDX72938	Canola	cytosol	76.69	76.53
CDX88601	Canola	cytosol	69.7	76.51
Bra006839.1-P	Field mustard	cytosol	69.7	76.51
TraesCS3B01G281100.2	Wheat	cytosol	76.48	76.32
TraesCS3D01G252000.2	Wheat	cytosol	76.48	76.32
TraesCS3A01G251600.2	Wheat	cytosol	76.27	76.11
AT5G57015.1	Thale cress	cytosol	70.13	76.09
CDY53866	Canola	cytosol	71.82	76.01
CDY38255	Canola	cytosol	69.07	75.81
Bra002771.1-P	Field mustard	cytosol	69.49	75.75
CDY54387	Canola	cytosol	69.07	75.29
Solyc06g062790.2.1	Tomato	cytosol, nucleus	74.36	75.16
GSMUA_Achr7P13580_001	Banana	cytosol	74.58	74.89
AT4G26100.1	Thale cress	cytosol	71.19	74.67
CDY20695	Canola	cytosol	66.1	74.64
CDY32908	Canola	cytosol	66.1	74.46
CDX94377	Canola	cytosol	70.97	72.83
Bra013949.1-P	Field mustard	cytosol	70.76	72.61
Solyc09g090230.1.1	Tomato	cytosol, nucleus	17.58	71.55
Zm00001d011696_P002	Maize	cytosol	66.1	70.43
CDY69293	Canola	cytosol	48.94	66.38
Zm00001d043693_P002	Maize	cytosol	64.62	65.73
Solyc12g007280.1.1	Tomato	cytosol	51.91	65.33
Solyc09g066440.2.1	Tomato	cytosol	59.96	61.52
Solyc06g008320.2.1	Tomato	cytosol, nucleus	59.53	61.49
Solyc08g066870.2.1	Tomato	cytosol, nucleus	49.36	60.99
Solyc06g083830.2.1	Tomato	cytosol	58.9	60.57
Solyc06g053560.2.1	Tomato	cytosol	55.72	59.5
Solyc09g090250.2.1	Tomato	nucleus	56.36	57.33
Solyc09g090240.1.1	Tomato	cytosol	23.52	56.92
CDX82685	Canola	cytosol, nucleus, vacuole	22.88	34.73
Solyc08g066410.1.1	Tomato	cytosol	19.7	26.96
Solyc12g100310.1.1	Tomato	nucleus	28.39	22.26
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	30.93	21.1
Solyc12g095830.1.1	Tomato	nucleus	30.72	20.57
Solyc01g006120.2.1	Tomato	nucleus	29.66	20.53
Solyc10g080700.1.1	Tomato	nucleus	30.51	20.31
Solyc08g066400.1.1	Tomato	cytosol	10.17	14.41

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740
GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4CDU9	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc07g040720.2	EnsemblPlants:Solyc07g040720.2.1
UniParc:UPI000276B621	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:49452353..49458805

Molecular Weight (calculated)

52929.8 Da

IEP (calculated)

9.921

GRAVY (calculated)

-0.620

Length

472 amino acids

Sequence
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNIQ TNEEVAIKLE NNKTKHPQLL YESKLYRILQ GGTGIPNVRW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRVEFVH SKSFLHRDIK PDNFLMGLGR RANQVYAIDF GLAKKYRDTS SHQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: FVLMYFLRGS LPWQGLKAGN KKQKYEKISE KKVSTSIEAL CRGYPTEFAS YFHYCRSLRF EDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQI
301: AAPPSRPLGA GAGTSSGMPP VIPKAERQAG EDEGRQSADP SRRRSPVPPL ITSGSLSRQK SPIGNDSTSK EAMLSSSSFL GRPSGSLRQG LVSGSRETFT
401: MGNDSDPTHS RTPEASPATM HKISGGHRSS LLGGSSDPRY ASSSKNTSGI KNYESALKGI ETLHFDDEER AH

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.