Factsheet for Solyc12g100310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23629	Canola	cytosol	72.59	83.24
GSMUA_Achr11P...	Banana	cytosol	79.9	80.17
CDY55141	Canola	cytosol	80.73	76.9
Solyc01g006120.2.1	Tomato	nucleus	87.04	76.83
TraesCS5B01G000400.2	Wheat	cytosol	75.08	75.71
TraesCS5D01G000900.1	Wheat	cytosol	74.92	75.54
TraesCS5A01G000600.2	Wheat	cytosol	74.92	75.54
CDX97505	Canola	mitochondrion	81.23	74.89
CDX75726	Canola	mitochondrion	80.9	74.69
CDX82524	Canola	mitochondrion	81.06	74.62
Zm00001d041186_P002	Maize	nucleus	73.59	73.96
KRH01814	Soybean	nucleus	82.06	73.51
HORVU5Hr1G000060.5	Barley	cytosol	72.59	73.45
KRH46874	Soybean	nucleus	81.89	73.36
OQU79738	Sorghum	nucleus	74.92	73.1
Bra001518.1-P	Field mustard	cytosol	80.73	71.16
CDY51730	Canola	cytosol	80.73	71.05
Bra021498.1-P	Field mustard	cytosol	80.4	70.86
Bra027409.1-P	Field mustard	cytosol, plastid	81.06	70.83
GSMUA_Achr8P16690_001	Banana	endoplasmic reticulum, plasma membrane	78.9	70.68
KRG93028	Soybean	cytosol	78.07	70.25
KRH36274	Soybean	nucleus	78.24	70.09
VIT_06s0004g01090.t01	Wine grape	nucleus	82.89	69.89
AT3G13670.1	Thale cress	cytosol	81.06	69.42
GSMUA_Achr6P11480_001	Banana	plastid	79.07	67.81
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	73.75	64.16
Solyc12g095830.1.1	Tomato	nucleus	74.92	63.97
Solyc08g066400.1.1	Tomato	cytosol	34.22	61.86
Solyc10g080700.1.1	Tomato	nucleus	72.09	61.21
Solyc08g066410.1.1	Tomato	cytosol	30.4	53.04
Solyc09g090230.1.1	Tomato	cytosol, nucleus	6.48	33.62
Solyc06g053560.2.1	Tomato	cytosol	23.92	32.58
Solyc09g066440.2.1	Tomato	cytosol	24.42	31.96
Solyc06g008320.2.1	Tomato	cytosol, nucleus	24.25	31.95
Solyc06g083830.2.1	Tomato	cytosol	24.09	31.59
Solyc12g007280.1.1	Tomato	cytosol	19.27	30.93
Solyc09g090250.2.1	Tomato	nucleus	23.59	30.6
Solyc05g016410.2.1	Tomato	cytosol, nucleus	22.76	29.21
Solyc03g121820.2.1	Tomato	cytosol, nucleus	22.76	29.15
Solyc06g062790.2.1	Tomato	cytosol, nucleus	22.43	28.91
Solyc07g040720.2.1	Tomato	nucleus	22.26	28.39
Solyc09g090240.1.1	Tomato	cytosol	9.14	28.21
Solyc08g066870.2.1	Tomato	cytosol, nucleus	17.61	27.75

Protein Annotations

Gene3D:1.10.510.10	MapMan:12.3.6.2	MapMan:18.4.4.2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301
GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4DI52	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF207
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc12g100310.1
EnsemblPlants:Solyc12g100310.1.1	UniParc:UPI0002769471	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:67075173..67084219

Molecular Weight (calculated)

67354.4 Da

IEP (calculated)

9.136

GRAVY (calculated)

-0.429

Length

602 amino acids

Sequence
(BLAST)

001: MGDQSGGLSA NNKGTEQDDD GKNSPIPKKV KVGMSPVYQV ERKLGKGGFG QVFLGRRLSG GNESSNGQGA VEVALKFEHM KSKGCNYGPP HEWQVYNTLG
101: GSHGVPSVHY KGRVGDYYVM VMDMLGPSLW DVWNSSGQAM SAEMVACIAV ESLSILSIMH AQGYVHGDVK PENFLLGQPS TLQEKKLFLV DLGLATKWRE
201: NVKGPHVVYD QRPDMFRGTV RYASAHAHLG RTASRRDDLE SLAYTLIFLH RGRLPWQGFQ GDNKSFLVCK KKMATSPEML CCFCPSPLRE FLDIVINMKF
301: DEEPNYSKLI SLFGSLLGPD PAIRPINTDG AQKILQVGQK RGRLNVEEGE EQPRKKVRIG VPASQWISIY NARKPMKQRY HYNVTDTRLA EHVEKGTEDG
401: LYISCVASCS DFWAIIMDAG TNFTSQVYEL SQSFLHKEWV MEQWEKNYYI SSLAGATNGS SLVVMSKGTQ FSQQSYKVSE SFPFKWISKK WKEGFNVTSM
501: ATAGSRWAVV MSRNSGVSNQ VVELDFLYPS EGIHKRWDNG YRITATAATL DQAALILSVP RRRPGDETQE TLRTSQFPST HVKEKWAKNL YLSCLCYGRT
601: VS

Best Arabidopsis Sequence Match ( AT3G13670.1 )
(BLAST)

001: MPELRRGVRR GRVTDAVAPN QLPQTPTEKK PKKSTVKAPK PVAGGVTGVA ERPRTRLAAR KLKEEDKEIP QEIPVVVPSK DSDIDKNKGK EVVVEEEKKD
101: MAIGNDSGGS NKAAAQEEEG NTAPFPERVQ VGGSPLYKVE RKLGKGGFGQ VFVGRRISGG NDRSAGASIL EVALKFEHRS SKGCNYGPPH EWQVYNTLGG
201: SHGVPRVHFK GRQGDYYVMV MDMLGPSLWD LWNTSGQAMS SEMVACIAVE SLSILEKMHA KGYVHGDVKP ENFLLGQPST SQEKKLFLVD LGLATKWREG
301: GSGQHVEYDQ RPDMFRGTVR YASAHAHLGR TASRRDDLES LAYTLIFLHR GRLPWQGYQG DNKSFLVCKK KMATSPDMLC CFCPPPFKQF LEIVVNMKFD
401: EEPNYGKLVS LFQDLLGENP AIRPINTEGA QKIIFQVGQK RGRLSIGEEE EDAPRKKVRL GVPATQWISI YNARQPMKQR YHYNVADIRL AQHIERGIAD
501: GLLISCVSSC SNLWALIMDA GTGFTHQVYE LSPVFLHKEW IMEQWEKNYY ISSIAGASNG SSLVVMSKGT QYTQQSYKVS DSFPFKWINK KWREGFHVTS
601: MATAGNRWGV VMSRNSGYSE QVVELDFLYP SEGIHRRWDG GFRITSTAAT TDQAALILSI PRRRLVDETQ ETLRTSQFPS THVKEKWGKN LYLASLSYGR
701: TVS

Arabidopsis Description

Casein kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LID3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.