Factsheet for VIT_06s0004g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0085g00700.t01	Wine grape	cytosol	15.55	91.74
GSMUA_Achr11P...	Banana	cytosol	74.09	88.17
CDY23629	Canola	cytosol	64.29	87.43
CDY55141	Canola	cytosol	75.63	85.44
KRH01814	Soybean	nucleus	79.97	84.97
KRH46874	Soybean	nucleus	79.55	84.52
CDX97505	Canola	mitochondrion	77.17	84.38
CDX75726	Canola	mitochondrion	76.19	83.44
Solyc12g100310.1.1	Tomato	nucleus	69.89	82.89
CDX82524	Canola	mitochondrion	75.77	82.72
TraesCS5B01G000400.2	Wheat	cytosol	67.51	80.74
CDY51730	Canola	cytosol	77.31	80.7
Bra021498.1-P	Field mustard	cytosol	77.17	80.67
TraesCS5A01G000600.2	Wheat	cytosol	67.37	80.57
TraesCS5D01G000900.1	Wheat	cytosol	67.37	80.57
KRG93028	Soybean	cytosol	75.49	80.57
Bra027409.1-P	Field mustard	cytosol, plastid	77.73	80.55
KRH36274	Soybean	nucleus	75.35	80.06
GSMUA_Achr8P16690_001	Banana	endoplasmic reticulum, plasma membrane	75.07	79.76
Bra001518.1-P	Field mustard	cytosol	76.05	79.5
GSMUA_Achr6P11480_001	Banana	plastid	77.73	79.06
Zm00001d041186_P002	Maize	nucleus	65.97	78.63
AT3G13670.1	Thale cress	cytosol	77.17	78.38
Solyc01g006120.2.1	Tomato	nucleus	74.09	77.57
HORVU5Hr1G000060.5	Barley	cytosol	64.57	77.48
OQU79738	Sorghum	nucleus	66.95	77.47
VIT_04s0008g00160.t01	Wine grape	cytosol	73.25	75.25
PGSC0003DMT400081865	Potato	cytosol	64.43	74.92
VIT_09s0002g03680.t01	Wine grape	cytosol	73.53	74.57
VIT_08s0007g07420.t01	Wine grape	cytosol	70.03	70.52
VIT_11s0016g04060.t01	Wine grape	cytosol	64.71	66.0
VIT_05s0049g01240.t01	Wine grape	cytosol	21.43	32.97
VIT_07s0005g03710.t01	Wine grape	cytosol	20.87	32.53
VIT_09s0002g01740.t01	Wine grape	cytosol	21.15	32.06
VIT_11s0016g01950.t01	Wine grape	cytosol	21.15	31.86
VIT_11s0016g03460.t01	Wine grape	cytosol	17.65	29.1

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100263956	wikigene:100263956	MapMan:12.3.6.2	MapMan:18.4.4.2	EMBL:AM441066
ProteinID:CAN69523	ProteinID:CAN69523.1	ProteinID:CCB43778	ProteinID:CCB43778.1	UniProt:F6GUF7	EMBL:FN594951
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008360	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	GO:GO:0048574	GO:GO:1990164
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100263956	wikigene:LOC100263956	PFAM:PF00069	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF207	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC68656	TIGR:TC70793	UniParc:UPI00015C7C10
ArrayExpress:VIT_06s0004g01090	EnsemblPlantsGene:VIT_06s0004g01090	EnsemblPlants:VIT_06s0004g01090.t01	unigene:Vvi.8763	RefSeq:XP_002283346	RefSeq:XP_002283346.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:1190226..1199293

Molecular Weight (calculated)

79621.8 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.544

Length

714 amino acids

Sequence
(BLAST)

001: MPELRRGVRR GRDPIDQRAK RSEHLVGNYI RTRAAVAKAR AVEAAAAGKG KAVVVEAPRV ARRRQRKGQV IVISEGQGGS EKERSEKPAE EEEGGLLGDK
101: EGGGGVGKKE MMGDDSGGLS ANKATGQEEE GSTAPFPERV QVGGSPVYKI ERKLGKGGFG QVFVGRRVTG GNERTSGPSA TEVALKFEHR NSKGCNYGPP
201: YEWQVYNTLG GSHGVPRVHY KGKQGDYYVM VMDMLGPSLW DVWNSSGQAM SSEMVACIAV ESLSILEKMH SRGYVHGDVK PENFLLGQPS TTQEKKLFLV
301: DLGLATKWRD SANGQHVEYD QRPDMFRGTV RYASVHAHLG RTASRRDDLE SLAYTLIFLH RGRLPWQGYQ GDNKSFLVCK KKMATSPEML CCFCPTPLKQ
401: FLEIVVNMKF DEEPNYSKLI SLFEGLIGPN PAIRPINTDG AQKIIYQVGQ KRGRLNVEEE EDGQPKKKVR LGIPATQWIS VYNARLPMKQ RYHYNVADGR
501: LAQHVDRGNA DGLLISCVAS CSNLWALIMD AGTGFTHQVY ELSPFFLHKE WIMEQWERNF YISSIAGANN GSSLVVMSKG TQYTQQSYKV SDSFPFKWIN
601: KKWREGFHVT SMATAGSRWG VVMSRNAGFS DQVVELDFLY PSEGIHRRWD SGYRITSTAA TWDQSALILS VPKRKPGDET QETLRTSQFP STHVKEKWAK
701: NLYLACVCYG RTVS

Best Arabidopsis Sequence Match ( AT3G13670.1 )
(BLAST)

001: MPELRRGVRR GRVTDAVAPN QLPQTPTEKK PKKSTVKAPK PVAGGVTGVA ERPRTRLAAR KLKEEDKEIP QEIPVVVPSK DSDIDKNKGK EVVVEEEKKD
101: MAIGNDSGGS NKAAAQEEEG NTAPFPERVQ VGGSPLYKVE RKLGKGGFGQ VFVGRRISGG NDRSAGASIL EVALKFEHRS SKGCNYGPPH EWQVYNTLGG
201: SHGVPRVHFK GRQGDYYVMV MDMLGPSLWD LWNTSGQAMS SEMVACIAVE SLSILEKMHA KGYVHGDVKP ENFLLGQPST SQEKKLFLVD LGLATKWREG
301: GSGQHVEYDQ RPDMFRGTVR YASAHAHLGR TASRRDDLES LAYTLIFLHR GRLPWQGYQG DNKSFLVCKK KMATSPDMLC CFCPPPFKQF LEIVVNMKFD
401: EEPNYGKLVS LFQDLLGENP AIRPINTEGA QKIIFQVGQK RGRLSIGEEE EDAPRKKVRL GVPATQWISI YNARQPMKQR YHYNVADIRL AQHIERGIAD
501: GLLISCVSSC SNLWALIMDA GTGFTHQVYE LSPVFLHKEW IMEQWEKNYY ISSIAGASNG SSLVVMSKGT QYTQQSYKVS DSFPFKWINK KWREGFHVTS
601: MATAGNRWGV VMSRNSGYSE QVVELDFLYP SEGIHRRWDG GFRITSTAAT TDQAALILSI PRRRLVDETQ ETLRTSQFPS THVKEKWGKN LYLASLSYGR
701: TVS

Arabidopsis Description

Casein kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LID3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.