Factsheet for VIT_05s0049g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_06s0061g01360.t01
VIT_08s0040g00470.t01
VIT_10s0003g01370.t01
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23340.1	VIT_10s0003g01370.t01	AT1G29240.1	21798944
AT3G23340.1	VIT_06s0061g01360.t01	AT2G27770.1	21798944
AT3G23340.1	VIT_10s0003g01370.t01	AT4G18630.1	21798944
AT4G14340.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G14340.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G14340.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT4G14340.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT4G14340.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT4G14340.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881
AT4G14340.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G14340.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34398	Soybean	nucleus	86.64	88.94
KRG92405	Soybean	cytosol	86.85	88.38
VIT_07s0005g03710.t01	Wine grape	cytosol	84.91	86.03
Solyc09g090250.2.1	Tomato	nucleus	85.99	85.99
Solyc06g053560.2.1	Tomato	cytosol	81.25	85.29
Bra023732.1-P	Field mustard	cytosol	76.72	82.22
CDY18127	Canola	cytosol	76.72	82.22
CDY66573	Canola	cytosol	76.51	81.99
AT3G23340.1	Thale cress	cytosol	77.16	81.0
CDY12062	Canola	cytosol	77.37	80.31
CDY12761	Canola	cytosol	77.16	80.27
Bra010762.1-P	Field mustard	cytosol	77.8	79.87
CDX90256	Canola	cytosol	77.8	79.87
AT4G14340.1	Thale cress	cytosol	77.8	78.99
CDY49413	Canola	cytosol	76.72	78.59
VIT_09s0002g01740.t01	Wine grape	cytosol	62.93	62.0
VIT_11s0016g01950.t01	Wine grape	cytosol	62.28	60.97
VIT_11s0016g03460.t01	Wine grape	cytosol	56.9	60.97
VIT_19s0085g00700.t01	Wine grape	cytosol	10.13	38.84
VIT_04s0008g00160.t01	Wine grape	cytosol	34.48	23.02
VIT_09s0002g03680.t01	Wine grape	cytosol	34.05	22.44
VIT_11s0016g04060.t01	Wine grape	cytosol	32.54	21.57
VIT_08s0007g07420.t01	Wine grape	cytosol	32.76	21.44
VIT_06s0004g01090.t01	Wine grape	nucleus	32.97	21.43

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100242639	wikigene:100242639	MapMan:18.4.4.1	ProteinID:CBI23660	ProteinID:CBI23660.3
UniProt:D7SZI3	EMBL:FN595496	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100242639	wikigene:LOC100242639	PFAM:PF00069	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF178	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC58797	UniParc:UPI00015C7524	ArrayExpress:VIT_05s0049g01240
EnsemblPlantsGene:VIT_05s0049g01240	EnsemblPlants:VIT_05s0049g01240.t01	unigene:Vvi.9199	RefSeq:XP_002285287	RefSeq:XP_002285287.2	RefSeq:XP_002285289
RefSeq:XP_002285289.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:8391197..8397525

Molecular Weight (calculated)

52524.3 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.713

Length

464 amino acids

Sequence
(BLAST)

001: MDHVIGGKFK LGRKIGSGSF GELYLGINVQ TGEEVAVKLE PVKTKHPQLH YESKLYMLLQ GGTGVPHLKW FGVEGEYNAM VIDLLGPSLE DLFNYCNRKF
101: SLKTVLMLAD QLINRVEYMH SRGFLHRDIK PDNFLMGLGR KANQVYIIDY GLAKKYRDFQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDKISE KKMLTPIEVL CKSYPSEFTS YFHYCRSLRF DDKPDYSYLK RLFRDLFIRE GYQFDYVFDW TVLKYPQIGS
301: SSRVRQPSGK PALNPGPSAE RMERPSVGQE IRDRFSGAVE AFSRRNNSGS GYHGDQSRHR GSEDVPSSKD VQTDSERPRS SSRNGSTSKR AVVSSSRPSS
401: SGEPTETRAS RLVSGSGRLS TTQRSQPGFE SKSSSFTRAS AARGGREDPL RSFELLTIGS GKKK

Best Arabidopsis Sequence Match ( AT4G14340.1 )
(BLAST)

001: MDRNQKMDHV IGGKFKLGRK LGSGSFGELY LGINIQTGEE VAVKLEPVKT RHPQLQYESK IYMFLQGGTG VPHLKWFGVE GEYSCMVIDL LGPSLEDLFN
101: YCKRIFSLKS VLMLADQLIC RVEYMHSRGF LHRDIKPDNF LMGLGRRANQ VYIIDYGLAK KYKDLQTQKH IPYRENKNLT GTARYASVNT HLGIEQSRRD
201: DLESLGYVLM YFLRGSLPWQ GLKAGTKKQK YDKISEKKML TSVETLCKSY PSEFTSYFHY CRSLRFEDKP DYSYLRRLFR DLFIREGYQL DYVFDWTISK
301: YPQIGSSSRP RPTPRPALDP PGPPAERAEK PTVGQDLRGR FTGAIEAFTR RNVSSQGALG DRSRHRSSDD IPSSAKEVHE SRNGSTSKRG VISSTRPGSS
401: AEPSENHSSR LFSSGSRHAT TQRVPQSYES AAAARPGHED AIRNFELLTI GSGKKRK

Arabidopsis Description

CKL11Casein kinase 1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q39050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.