Factsheet for VIT_06s0061g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22720	Soybean	plastid	72.91	72.19
KRH26585	Soybean	plastid	71.91	71.43
PGSC0003DMT400018411	Potato	cytosol	69.57	68.65
Solyc06g074500.1.1	Tomato	cytosol	69.23	68.32
KRH25175	Soybean	cytosol	69.9	65.93
KRH30504	Soybean	plastid	71.24	65.54
VIT_08s0007g03840.t01	Wine grape	nucleus	63.55	63.12
AT2G27770.1	Thale cress	plastid	63.88	59.69
CDX77134	Canola	cytosol, plastid	63.88	59.13
Bra034367.1-P	Field mustard	plastid	63.55	58.46
CDY30531	Canola	plastid	62.21	56.71
Solyc11g066930.1.1	Tomato	nucleus, plastid	56.52	52.98
GSMUA_Achr3P03050_001	Banana	nucleus	47.16	47.96
GSMUA_Achr11P...	Banana	plastid	45.15	46.55
GSMUA_Achr10P...	Banana	nucleus, plastid	46.49	45.57
GSMUA_Achr2P20270_001	Banana	cytosol	46.15	45.1
GSMUA_Achr8P29560_001	Banana	nucleus	44.48	45.08
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	45.15	45.0
GSMUA_Achr8P07610_001	Banana	cytosol	42.81	44.44
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	41.47	43.51
VIT_05s0020g03340.t01	Wine grape	cytosol	41.81	41.67
TraesCS7A01G277900.1	Wheat	plastid	33.78	34.01
TraesCS7D01G277700.1	Wheat	plastid	34.11	33.77
TraesCS5B01G130100.1	Wheat	plastid	35.79	33.75
HORVU7Hr1G058790.3	Barley	plastid	34.11	33.66
TraesCS5A01G130200.1	Wheat	plastid	35.45	33.65
TraesCS7B01G175700.1	Wheat	plastid	33.44	33.11
Os12t0149000-01	Rice	plastid	36.12	32.93
Zm00001d052520_P001	Maize	plastid	35.12	32.92
TraesCS5D01G137700.1	Wheat	plastid	35.12	32.71
HORVU5Hr1G041450.1	Barley	plastid	35.12	32.61
TraesCS2B01G308700.1	Wheat	cytosol	36.12	32.24
TraesCS2D01G290200.1	Wheat	cytosol	35.79	32.23
VIT_17s0000g09400.t01	Wine grape	cytosol	35.45	32.22
Zm00001d004919_P001	Maize	plastid	34.78	32.2
KXG22966	Sorghum	plastid	35.12	32.11
TraesCS4A01G183900.1	Wheat	plastid	33.44	31.75
VIT_01s0137g00740.t01	Wine grape	cytosol	31.77	31.67
TraesCS4B01G134800.1	Wheat	plastid	33.44	31.65
OQU82880	Sorghum	plastid	34.78	31.61
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	35.45	30.81
Os04t0407500-00	Rice	cytosol, plastid	25.75	30.8
Zm00001d031962_P001	Maize	plastid	32.44	30.7
TraesCS2A01G292300.1	Wheat	cytosol	34.78	30.68
TraesCS4D01G129600.1	Wheat	plastid	32.44	30.5
Zm00001d025337_P001	Maize	cytosol	35.12	30.43
VIT_12s0057g01390.t01	Wine grape	mitochondrion	31.44	30.13
KXG26216	Sorghum	cytosol	35.12	28.15
VIT_04s0008g05970.t01	Wine grape	plastid	34.45	27.76
HORVU4Hr1G001870.2	Barley	cytosol	31.77	27.62
TraesCS4A01G302100.1	Wheat	cytosol	31.44	26.55
VIT_14s0030g01700.t01	Wine grape	plastid	28.76	26.38
TraesCS4B01G012200.1	Wheat	cytosol	31.1	26.35
TraesCS4D01G010300.1	Wheat	cytosol	30.43	25.93

Protein Annotations

EntrezGene:100255180	wikigene:100255180	MapMan:35.2	ProteinID:CCB44181	ProteinID:CCB44181.1	InterPro:DUF868_pln
UniProt:F6GW46	EMBL:FN594957	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
EntrezGene:LOC100255180	wikigene:LOC100255180	PFAM:PF05910	PANTHER:PTHR31972	PANTHER:PTHR31972:SF10	UniParc:UPI00015C98F5
ArrayExpress:VIT_06s0061g01360	EnsemblPlantsGene:VIT_06s0061g01360	EnsemblPlants:VIT_06s0061g01360.t01	unigene:Vvi.17875	RefSeq:XP_002268230	RefSeq:XP_002268230.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:19189823..19190861

Molecular Weight (calculated)

33341.1 Da

IEP (calculated)

8.711

GRAVY (calculated)

-0.129

Length

299 amino acids

Sequence
(BLAST)

001: MRDIASCFGE YSVNVSDSSC SSYSNNACLS PSLIPSIQNA VTSVYKINLS TKKKLLISVT WCKNQLGQGL SINLGDDPSA AFKLNTNSRL FRKKKGNKLL
101: ESDNLKIEVF WDLSIAKYNT GPEPVEGFYV LVVVDSEIGL LLGDIAEEAA TRKLKSGTPV AKASLVSRRE HCSGNTLYST KAQFCDTGTA HDILIKCSGE
201: NEGLKHPVLS VSIDKKVVIR VKRLQWNFRG NQTIFVDGLL VDLMWDVHGW FFNPASGYAV FMFRTRSGMD SRLWLEEKLL QKDQDRLEFS LLIYACKSL

Best Arabidopsis Sequence Match ( AT2G27770.1 )
(BLAST)

001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT

Arabidopsis Description

At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.