Factsheet for Bra034367.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027483.1-P
Bra035974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27770.1	Bra027483.1-P	AT5G43320.1	21798944
AT2G27770.1	Bra035974.1-P	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30531	Canola	plastid	97.85	96.95
AT2G27770.1	Thale cress	plastid	80.92	82.19
VIT_06s0061g01360.t01	Wine grape	plastid	58.46	63.55
KRH26585	Soybean	plastid	54.77	59.14
KRH22720	Soybean	plastid	54.46	58.61
KRH25175	Soybean	cytosol	55.38	56.78
Solyc06g074500.1.1	Tomato	cytosol	51.69	55.45
KRH30504	Soybean	plastid	55.38	55.38
PGSC0003DMT400018411	Potato	cytosol	51.38	55.12
Solyc11g066930.1.1	Tomato	nucleus, plastid	48.62	49.53
GSMUA_Achr3P03050_001	Banana	nucleus	38.15	42.18
GSMUA_Achr2P20270_001	Banana	cytosol	38.77	41.18
GSMUA_Achr10P...	Banana	nucleus, plastid	38.15	40.66
GSMUA_Achr8P07610_001	Banana	cytosol	36.0	40.62
GSMUA_Achr11P...	Banana	plastid	36.0	40.34
GSMUA_Achr8P29560_001	Banana	nucleus	36.62	40.34
Bra040118.1-P	Field mustard	plastid	33.85	39.01
Bra023071.1-P	Field mustard	cytosol	37.85	38.32
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	32.31	36.71
Bra009991.1-P	Field mustard	plastid	32.0	35.49
TraesCS7A01G277900.1	Wheat	plastid	28.92	31.65
TraesCS7D01G277700.1	Wheat	plastid	29.23	31.46
HORVU7Hr1G058790.3	Barley	plastid	29.23	31.35
TraesCS7B01G175700.1	Wheat	plastid	28.62	30.79
OQU82880	Sorghum	plastid	31.08	30.7
TraesCS4B01G134800.1	Wheat	plastid	29.54	30.38
Os12t0149000-01	Rice	plastid	30.46	30.18
Zm00001d052520_P001	Maize	plastid	29.54	30.09
HORVU5Hr1G041450.1	Barley	plastid	29.54	29.81
Zm00001d004919_P001	Maize	plastid	29.54	29.72
KXG22966	Sorghum	plastid	29.85	29.66
TraesCS5B01G130100.1	Wheat	plastid	28.92	29.65
TraesCS4A01G183900.1	Wheat	plastid	28.62	29.52
TraesCS5A01G130200.1	Wheat	plastid	28.62	29.52
TraesCS4D01G129600.1	Wheat	plastid	28.62	29.25
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	30.46	28.78
TraesCS5D01G137700.1	Wheat	plastid	28.31	28.66
TraesCS2B01G308700.1	Wheat	cytosol	29.23	28.36
TraesCS2D01G290200.1	Wheat	cytosol	28.92	28.31
Zm00001d025337_P001	Maize	cytosol	29.85	28.12
Os04t0407500-00	Rice	cytosol, plastid	21.54	28.0
Zm00001d031962_P001	Maize	plastid	27.08	27.85
Bra036119.1-P	Field mustard	mitochondrion	32.0	27.23
TraesCS2A01G292300.1	Wheat	cytosol	28.31	27.14
Bra015139.1-P	Field mustard	nucleus	24.92	26.82
KXG26216	Sorghum	cytosol	30.46	26.54
HORVU4Hr1G001870.2	Barley	cytosol	28.0	26.45
TraesCS4A01G302100.1	Wheat	cytosol	28.0	25.71
TraesCS4B01G012200.1	Wheat	cytosol	27.69	25.5
TraesCS4D01G010300.1	Wheat	cytosol	27.08	25.07
Bra028555.1-P	Field mustard	nucleus	25.54	24.2
Bra001495.1-P	Field mustard	cytosol	21.54	24.05
Bra036180.1-P	Field mustard	plastid	23.38	23.6
Bra020708.1-P	Field mustard	mitochondrion	23.08	23.29
Bra037498.1-P	Field mustard	plastid	22.77	22.91
Bra007811.1-P	Field mustard	plastid	23.69	22.0
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	26.15	21.91

Protein Annotations

EnsemblPlants:Bra034367.1	EnsemblPlants:Bra034367.1-P	EnsemblPlantsGene:Bra034367	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF10
PFAM:PF05910	UniParc:UPI0002543A7E	UniProt:M4EZX4	MapMan:35.2	:	:

Description

AT2G27770 (E=5e-140) | unknown protein

Coordinates

chrA04:-:12170955..12171932

Molecular Weight (calculated)

36486.3 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.341

Length

325 amino acids

Sequence
(BLAST)

001: MRDLVSCFSE NSINVTHPLS LPSSCSNYNT SNACIPPSLI PSIQTSITSI YRITLPSKHL IIKVTWCNKI NPSHGLSISV SSADQNPSTS LKLNTSSRFF
101: RKKKGNKSVD SDLGKIEALW DLSSAKYDSN TGPEPIQSFY VIVLVDSRLA LLLGDSSEET LKKKSLAYDG FDSGKSLISR QEYFSGNTFY STKAKFVESG
201: DSHEIVIRCS AEKTEGLKQS SSTHNHRSPV LSVCIDEKTV TKVKRLQWNF RGNQTIFVDG LLVDLMWDVH DWFFCNPEGC GKAVFMFRTR NGLDSSRLWL
301: EEKKMVQKDE QDKLDFSLLI YACKT

Best Arabidopsis Sequence Match ( AT2G27770.1 )
(BLAST)

001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT

Arabidopsis Description

At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.