Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G378000.1 | |
| TraesCS6B01G415700.2 | |
| TraesCS6D01G362500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | TraesCS6A01G378000.1 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6B01G415700.2 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6D01G362500.1 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G010300.1 | Wheat | cytosol | 93.79 | 94.59 |
| TraesCS4B01G012200.1 | Wheat | cytosol | 91.24 | 91.5 |
| HORVU4Hr1G001870.2 | Barley | cytosol | 85.31 | 87.79 |
| TraesCS7A01G277900.1 | Wheat | plastid | 46.61 | 55.56 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 32.49 | 39.93 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 30.51 | 36.73 |
| GSMUA_Achr11P... | Banana | plastid | 29.94 | 36.55 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 31.36 | 36.39 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 29.94 | 35.93 |
| TraesCS5A01G130200.1 | Wheat | plastid | 30.51 | 34.29 |
| TraesCS2A01G292300.1 | Wheat | cytosol | 32.77 | 34.22 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 29.38 | 33.99 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 26.55 | 31.44 |
| KRH26585 | Soybean | plastid | 26.55 | 31.23 |
| KRH22720 | Soybean | plastid | 25.71 | 30.13 |
| PGSC0003DMT400006889 | Potato | nucleus | 12.99 | 30.07 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 25.42 | 29.9 |
| TraesCS4A01G183900.1 | Wheat | plastid | 25.99 | 29.21 |
| TraesCS5A01G456500.1 | Wheat | plastid | 24.01 | 29.11 |
| AT2G27770.1 | Thale cress | plastid | 26.27 | 29.06 |
| CDX77134 | Canola | cytosol, plastid | 26.27 | 28.79 |
| PGSC0003DMT400018411 | Potato | cytosol | 24.58 | 28.71 |
| Solyc06g074500.1.1 | Tomato | cytosol | 24.58 | 28.71 |
| KRH25175 | Soybean | cytosol | 25.42 | 28.39 |
| CDY30531 | Canola | plastid | 25.99 | 28.05 |
| KRH30504 | Soybean | plastid | 25.71 | 28.0 |
| Bra034367.1-P | Field mustard | plastid | 25.71 | 28.0 |
| KRH67854 | Soybean | cytosol | 24.29 | 27.92 |
| KRG96144 | Soybean | nucleus | 24.01 | 27.69 |
| TraesCS2A01G196200.1 | Wheat | plastid | 22.03 | 27.56 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 22.6 | 27.21 |
| TraesCS1A01G026000.1 | Wheat | cytosol | 22.88 | 26.64 |
| TraesCS3A01G415900.1 | Wheat | plastid | 21.75 | 24.21 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 21.75 | 24.14 |
| CDX79683 | Canola | cytosol | 20.62 | 23.03 |
| CDX84556 | Canola | cytosol | 20.34 | 22.43 |
| Bra023071.1-P | Field mustard | cytosol | 20.34 | 22.43 |
| TraesCS7A01G146000.1 | Wheat | plastid | 21.19 | 21.99 |
| AT2G36470.1 | Thale cress | nucleus | 20.06 | 21.71 |
| TraesCS6A01G161700.1 | Wheat | cytosol | 16.67 | 18.85 |
| CDY33155 | Canola | cytosol | 20.06 | 17.75 |
| TraesCS5A01G226100.1 | Wheat | plastid | 20.34 | 17.39 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G302100.1 | EnsemblPlantsGene:TraesCS4A01G302100 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF39 | PFAM:PF05910 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:598730760..598732038
Molecular Weight (calculated)
37697.4 Da
IEP (calculated)
9.614
GRAVY (calculated)
-0.264
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKDFSCFRD GAVTTLAVAE PGSSADRLDR SLQAATACVY RLALASRKDL LVTVTWTRRS VVTSTPVADA AAAGATGLSV AVEEVQAEAS SNSKPTLPPS
101: SATPRRSAVK PAATATAQQR VVHLMHKRRG SRAFVTEGGT AVAVHWDTSE AKYAAASPEP CGGEYHLAVV ADAELALLLG RGAAREELSR RFGAASPRPF
201: AALVSRREQL RAPSSAEAAS VAHSTRCRFR DGGAEHEVTV RCRGDRRRTS SSSGEHVDGE VAVSVDGKSI VEARRVGWNF RGNRTAVLGD GAVVEVMWDV
301: HDWWFAGGLG AAQFMVKARG PGPADGGRVW MDEELASQGQ PPAGFFLHMQ CYRR
101: SATPRRSAVK PAATATAQQR VVHLMHKRRG SRAFVTEGGT AVAVHWDTSE AKYAAASPEP CGGEYHLAVV ADAELALLLG RGAAREELSR RFGAASPRPF
201: AALVSRREQL RAPSSAEAAS VAHSTRCRFR DGGAEHEVTV RCRGDRRRTS SSSGEHVDGE VAVSVDGKSI VEARRVGWNF RGNRTAVLGD GAVVEVMWDV
301: HDWWFAGGLG AAQFMVKARG PGPADGGRVW MDEELASQGQ PPAGFFLHMQ CYRR
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
Arabidopsis Description
At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.