Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G378000.1 | |
| TraesCS6B01G415700.2 | |
| TraesCS6D01G362500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | TraesCS6A01G378000.1 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6B01G415700.2 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6D01G362500.1 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G010300.1 | Wheat | cytosol | 94.05 | 94.59 |
| TraesCS4A01G302100.1 | Wheat | cytosol | 91.5 | 91.24 |
| HORVU4Hr1G001870.2 | Barley | cytosol | 84.7 | 86.92 |
| TraesCS7B01G175700.1 | Wheat | plastid | 47.03 | 54.97 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 32.86 | 40.28 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 31.16 | 37.29 |
| GSMUA_Achr11P... | Banana | plastid | 30.31 | 36.9 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 30.31 | 36.39 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 31.44 | 36.39 |
| TraesCS5B01G130100.1 | Wheat | plastid | 31.16 | 34.7 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 29.18 | 33.66 |
| TraesCS2B01G308700.1 | Wheat | cytosol | 31.73 | 33.43 |
| KRH26585 | Soybean | plastid | 26.91 | 31.56 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 26.35 | 31.1 |
| KRH22720 | Soybean | plastid | 26.06 | 30.46 |
| PGSC0003DMT400006889 | Potato | nucleus | 13.03 | 30.07 |
| TraesCS4B01G134800.1 | Wheat | plastid | 26.63 | 29.75 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 25.21 | 29.57 |
| Solyc06g074500.1.1 | Tomato | cytosol | 24.93 | 29.04 |
| PGSC0003DMT400018411 | Potato | cytosol | 24.93 | 29.04 |
| AT2G27770.1 | Thale cress | plastid | 26.06 | 28.75 |
| CDX77134 | Canola | cytosol, plastid | 26.06 | 28.48 |
| KRH25175 | Soybean | cytosol | 25.5 | 28.39 |
| KRH67854 | Soybean | cytosol | 24.65 | 28.25 |
| KRH30504 | Soybean | plastid | 25.78 | 28.0 |
| TraesCS2B01G223900.1 | Wheat | plastid | 22.38 | 27.92 |
| CDY30531 | Canola | plastid | 25.78 | 27.74 |
| Bra034367.1-P | Field mustard | plastid | 25.5 | 27.69 |
| KRG96144 | Soybean | nucleus | 24.08 | 27.69 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 22.38 | 26.87 |
| TraesCS1B01G032400.1 | Wheat | cytosol | 22.95 | 26.56 |
| TraesCS5B01G465500.1 | Wheat | plastid | 24.08 | 25.3 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 22.38 | 24.76 |
| TraesCS3B01G451100.1 | Wheat | plastid | 22.1 | 24.38 |
| CDX79683 | Canola | cytosol | 20.96 | 23.34 |
| CDX84556 | Canola | cytosol | 20.68 | 22.74 |
| Bra023071.1-P | Field mustard | cytosol | 20.68 | 22.74 |
| AT2G36470.1 | Thale cress | nucleus | 20.68 | 22.32 |
| TraesCS6B01G189500.1 | Wheat | cytosol | 17.56 | 19.87 |
| TraesCS7B01G048400.1 | Wheat | plastid | 21.81 | 19.59 |
| TraesCS5B01G224600.1 | Wheat | plastid | 20.68 | 17.63 |
| CDY33155 | Canola | cytosol | 19.83 | 17.5 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G012200.1 | EnsemblPlantsGene:TraesCS4B01G012200 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF39 | PFAM:PF05910 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:7830723..7831784
Molecular Weight (calculated)
37346.0 Da
IEP (calculated)
9.807
GRAVY (calculated)
-0.229
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKDFSCFRD GAVTTLAVAE PGSSGDRLDR SLQAATACVY RVALAERKEL LVTVTWTRRS VVTTSVADAA AAGATGLSVA VEEVQAKAST KPTFPVSSAA
101: GTPAATPRRA AVKQAATGSA QQRVVHLMHK RRGSRSFVTE GGTAVAVHWD TSEAKYAAAS PEPCGGEYHL AVVADAELAL LLGRGAAREE LSRRFGAASR
201: AVLVSRREQL RAPSSAEAAS VAHSTRCSFR DGGAEHEVTV RCRGDRRGAA SRGEHGDGEV AVSVDGKSIV EARRVGWNFR GNRTAVLGDG AVVEVMWDVH
301: DWWFAGGVGA AQFMVKARGP GPADGGRVWM DEELASKGQP PAGFFLHMQC YRR
101: GTPAATPRRA AVKQAATGSA QQRVVHLMHK RRGSRSFVTE GGTAVAVHWD TSEAKYAAAS PEPCGGEYHL AVVADAELAL LLGRGAAREE LSRRFGAASR
201: AVLVSRREQL RAPSSAEAAS VAHSTRCSFR DGGAEHEVTV RCRGDRRGAA SRGEHGDGEV AVSVDGKSIV EARRVGWNFR GNRTAVLGDG AVVEVMWDVH
301: DWWFAGGVGA AQFMVKARGP GPADGGRVWM DEELASKGQP PAGFFLHMQC YRR
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
Arabidopsis Description
At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.