Factsheet for VIT_08s0007g03840.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g01360.t01	Wine grape	plastid	63.12	63.55
KRG96144	Soybean	nucleus	61.79	60.59
KRH67854	Soybean	cytosol	61.13	59.74
PGSC0003DMT400006889	Potato	nucleus	28.57	56.21
Solyc09g009280.1.1	Tomato	cytosol, peroxisome, plastid	51.49	52.72
GSMUA_Achr3P03050_001	Banana	nucleus	45.85	46.94
CDX84556	Canola	cytosol	46.51	43.61
CDX79683	Canola	cytosol	45.85	43.53
GSMUA_Achr11P...	Banana	plastid	41.86	43.45
GSMUA_Achr8P29560_001	Banana	nucleus	42.52	43.39
Bra023071.1-P	Field mustard	cytosol	46.18	43.3
AT2G36470.1	Thale cress	nucleus	46.18	42.51
GSMUA_Achr10P...	Banana	nucleus, plastid	42.86	42.3
GSMUA_Achr2P20270_001	Banana	cytosol	42.86	42.16
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	38.21	38.33
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	36.21	38.25
GSMUA_Achr8P07610_001	Banana	cytosol	36.21	37.85
VIT_05s0020g03340.t01	Wine grape	cytosol	35.88	36.0
TraesCS5B01G130100.1	Wheat	plastid	37.87	35.96
TraesCS5A01G130200.1	Wheat	plastid	37.21	35.56
TraesCS5D01G137700.1	Wheat	plastid	37.21	34.89
HORVU5Hr1G041450.1	Barley	plastid	36.54	34.16
Zm00001d052520_P001	Maize	plastid	35.22	33.23
CDY33155	Canola	cytosol	43.85	33.0
TraesCS4A01G183900.1	Wheat	plastid	34.22	32.7
TraesCS4B01G134800.1	Wheat	plastid	34.22	32.59
OQU82880	Sorghum	plastid	35.22	32.22
Zm00001d004919_P001	Maize	plastid	34.55	32.2
KXG22966	Sorghum	plastid	34.88	32.11
TraesCS2B01G308700.1	Wheat	cytosol	35.55	31.94
TraesCS2D01G290200.1	Wheat	cytosol	35.22	31.93
TraesCS4D01G129600.1	Wheat	plastid	33.55	31.76
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	36.21	31.69
Os04t0407500-00	Rice	cytosol, plastid	26.25	31.6
TraesCS2A01G292300.1	Wheat	cytosol	34.88	30.97
Os12t0149000-01	Rice	plastid	33.55	30.79
Zm00001d025337_P001	Maize	cytosol	35.22	30.72
TraesCS7D01G277700.1	Wheat	plastid	30.23	30.13
TraesCS7A01G277900.1	Wheat	plastid	29.57	29.97
HORVU7Hr1G058790.3	Barley	plastid	29.9	29.7
TraesCS7B01G175700.1	Wheat	plastid	29.24	29.14
KXG26216	Sorghum	cytosol	35.88	28.95
Zm00001d031962_P001	Maize	plastid	28.9	27.53
VIT_17s0000g09400.t01	Wine grape	cytosol	29.9	27.36
VIT_01s0137g00740.t01	Wine grape	cytosol	26.25	26.33
HORVU4Hr1G001870.2	Barley	cytosol	29.9	26.16
VIT_12s0057g01390.t01	Wine grape	mitochondrion	26.91	25.96
TraesCS4D01G010300.1	Wheat	cytosol	29.9	25.64
VIT_14s0030g01700.t01	Wine grape	plastid	27.57	25.46
TraesCS4A01G302100.1	Wheat	cytosol	29.9	25.42
TraesCS4B01G012200.1	Wheat	cytosol	29.57	25.21
VIT_04s0008g05970.t01	Wine grape	plastid	29.57	23.99

Protein Annotations

EntrezGene:100240905	wikigene:100240905	MapMan:35.2	EMBL:AM423532	ProteinID:CAN62312	ProteinID:CAN62312.1
ProteinID:CCB55402	ProteinID:CCB55402.1	InterPro:DUF868_pln	UniProt:F6HKI0	EMBL:FN595991	EntrezGene:LOC100240905
wikigene:LOC100240905	PFAM:PF05910	PANTHER:PTHR31972	PANTHER:PTHR31972:SF16	UniParc:UPI00015C92AA	ArrayExpress:VIT_08s0007g03840
EnsemblPlantsGene:VIT_08s0007g03840	EnsemblPlants:VIT_08s0007g03840.t01	unigene:Vvi.24084	unigene:Vvi.24202	RefSeq:XP_002283412	RefSeq:XP_002283412.1
RefSeq:XP_010654045.1	RefSeq:XP_019077014.1	:	:	:	:

Description

No Description!

Coordinates

chr8:-:17815822..17817030

Molecular Weight (calculated)

33872.4 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.184

Length

301 amino acids

Sequence
(BLAST)

001: MRTIASCYSE HAIKVSDSYC SGPSNQACLS PSLIPSIQKA VTCIYKARLS NQKQLLITLN WCNNLVGQGF SIKISNDLSS SFESNAVSHQ FRNNRGTRTF
101: ELCDSRIEVF WDLSRAQYDS GPEPINGFYV IVLADSELSL LLGDMDVEPH VKKLINGIPV AKFSLVSRSE HFSGNAVYLT KVQFCDTGTA HDILIKCSGE
201: DEGSRNPVLS VCVDNKKVIQ VKRLRWNFRG NQTIFVDGLL VDMMWDVHDW FFNPSSGSAV FMFRTRSGLD SRLWLEEKNL TNKEQEKVEF SLLICACKNP
301: D

Best Arabidopsis Sequence Match ( AT2G27770.1 )
(BLAST)

001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT

Arabidopsis Description

At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.