Factsheet for VIT_12s0057g01390.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27882	Canola	nucleus	65.71	70.45
CDY00849	Canola	nucleus	65.71	70.45
AT4G12690.2	Thale cress	nucleus	62.5	68.42
Bra015139.1-P	Field mustard	nucleus	66.03	68.21
AT2G04220.1	Thale cress	cytosol	66.67	67.75
KRH16994	Soybean	cytosol	65.71	67.21
PGSC0003DMT400069001	Potato	plastid	66.03	66.88
Solyc12g044670.1.1	Tomato	plastid	65.71	66.56
KRH72631	Soybean	cytosol	64.74	65.8
PGSC0003DMT400006698	Potato	mitochondrion	64.42	65.26
Solyc03g121220.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	64.1	62.89
KRG90008	Soybean	plastid	58.33	57.78
CDY05690	Canola	mitochondrion, plastid	55.13	57.33
CDX86317	Canola	plastid	56.41	57.33
CDY48744	Canola	mitochondrion, plastid	55.77	57.24
GSMUA_Achr3P12010_001	Banana	cytosol	49.36	55.8
CDX85324	Canola	plastid	49.68	55.76
Bra037498.1-P	Field mustard	plastid	57.69	55.73
GSMUA_AchrUn_...	Banana	cytosol	49.68	55.56
Bra020708.1-P	Field mustard	mitochondrion	57.05	55.28
CDY00069	Canola	plastid	54.17	54.87
AT5G48270.1	Thale cress	plastid	56.41	54.66
CDY19961	Canola	plastid	53.53	54.58
Bra036180.1-P	Field mustard	plastid	55.13	53.42
Zm00001d015796_P001	Maize	cytosol	31.73	51.56
TraesCS6B01G189500.1	Wheat	cytosol	47.12	47.12
VIT_01s0137g00740.t01	Wine grape	cytosol	44.55	46.33
TraesCS6A01G161700.1	Wheat	cytosol	46.47	46.33
TraesCS6D01G150500.1	Wheat	nucleus	46.47	46.33
HORVU6Hr1G032720.1	Barley	cytosol	46.47	46.03
VIT_17s0000g09400.t01	Wine grape	cytosol	47.12	44.68
Zm00001d053654_P001	Maize	plastid	41.99	44.26
OQU84582	Sorghum	cytosol	43.91	42.68
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	37.18	40.7
VIT_05s0020g03340.t01	Wine grape	cytosol	37.5	39.0
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	37.5	39.0
Os02t0198800-01	Rice	cytosol, nucleus	41.99	35.22
VIT_06s0061g01360.t01	Wine grape	plastid	30.13	31.44
VIT_08s0007g03840.t01	Wine grape	nucleus	25.96	26.91
VIT_14s0030g01700.t01	Wine grape	plastid	26.92	25.77
VIT_04s0008g05970.t01	Wine grape	plastid	30.45	25.61

Protein Annotations

ArrayExpress:VIT_12s0057g01390	EMBL:FN595759	EnsemblPlants:VIT_12s0057g01390.t01	EnsemblPlantsGene:VIT_12s0057g01390	EntrezGene:100249414	EntrezGene:LOC100249414
InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2	PFAM:PF05910	ProteinID:CCB51758	ProteinID:CCB51758.1
RefSeq:XP_002266988	RefSeq:XP_002266988.1	SEG:seg	UniParc:UPI000198468C	UniProt:F6HHR2	wikigene:100249414
wikigene:LOC100249414	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr12:-:10118700..10119638

Molecular Weight (calculated)

35289.4 Da

IEP (calculated)

7.999

GRAVY (calculated)

-0.502

Length

312 amino acids

Sequence
(BLAST)

001: MSNNIRNGGR AQSFSIQTSA PPAERVTDEP VTYKTAQSTV TCAYQTNIAG FWRNVTILWC KNIMNHSLSI TVDSLDGEIH HTCKIDLKPW HFWSKKGYKS
101: FEFDGNPVDV FWDLRSAKFS GGPEPSADYY VALVSDEEVV LLLGDHKKKA YKRTKSRPAL VDAIQFYKKE NVFAKKCFST RAKFEEKKKE HDIVVESSTS
201: GPRDPEMWIS IDGIVLIHVK NLQWKFRGNQ TVLVDKLQVQ VFWDVHDWLF SNPGTGHGLF IFKPGAPEAD SDRDGDSSRG GDSDTSTGSS RYYNARAAAP
301: EFSLLLYAWK ID

Best Arabidopsis Sequence Match ( AT2G04220.1 )
(BLAST)

001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE

Arabidopsis Description

DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.