CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48744	Canola	mitochondrion, plastid	95.33	94.08
CDX85324	Canola	plastid	84.67	91.37
CDX86317	Canola	plastid	92.0	89.9
CDY00069	Canola	plastid	88.33	86.04
CDY19961	Canola	plastid	87.0	85.29
AT5G48270.1	Thale cress	plastid	89.33	83.23
CDY27882	Canola	nucleus	58.33	60.14
CDY00849	Canola	nucleus	58.33	60.14
KRH16994	Soybean	cytosol	57.0	56.07
VIT_12s0057g01390.t01	Wine grape	mitochondrion	57.33	55.13
KRH72631	Soybean	cytosol	56.33	55.05
Solyc12g044670.1.1	Tomato	plastid	56.0	54.55
PGSC0003DMT400069001	Potato	plastid	56.0	54.55
PGSC0003DMT400006698	Potato	mitochondrion	52.67	51.3
KRG90008	Soybean	plastid	52.33	49.84
Solyc03g121220.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	52.67	49.69
GSMUA_AchrUn_...	Banana	cytosol	45.67	49.1
GSMUA_Achr3P12010_001	Banana	cytosol	41.67	45.29
Zm00001d015796_P001	Maize	cytosol	28.0	43.75
Zm00001d053654_P001	Maize	plastid	41.33	41.89
OQU84582	Sorghum	cytosol	42.67	39.88
CDY66553	Canola	cytosol	36.33	38.65
TraesCS6B01G189500.1	Wheat	cytosol	39.0	37.5
CDX82547	Canola	cytosol	36.33	37.46
TraesCS6D01G150500.1	Wheat	nucleus	38.67	37.06
TraesCS6A01G161700.1	Wheat	cytosol	38.33	36.74
HORVU6Hr1G032720.1	Barley	cytosol	38.33	36.51
CDY50761	Canola	cytosol, peroxisome, plastid	33.67	35.19
CDY21108	Canola	plastid	32.67	34.75
CDY72112	Canola	cytosol, peroxisome, plastid	32.67	34.75
CDY30020	Canola	cytosol, plastid	32.0	34.04
CDY52485	Canola	plastid	33.0	33.79
CDX86191	Canola	plastid	33.0	33.79
CDY00013	Canola	cytosol, plastid	33.0	33.56
Os02t0198800-01	Rice	cytosol, nucleus	39.0	31.45
CDX85733	Canola	cytosol, nucleus, plastid	28.33	24.78
CDY51100	Canola	cytosol	27.67	24.41
CDX77134	Canola	cytosol, plastid	26.0	24.15
CDX69793	Canola	nucleus	28.33	22.61
CDY30531	Canola	plastid	24.67	22.56
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	33.33	22.52
CDX97072	Canola	nucleus	28.67	22.22
CDX79683	Canola	cytosol	23.0	21.77
CDX84556	Canola	cytosol	23.0	21.5
CDX76763	Canola	plastid	24.0	20.63
CDY56275	Canola	cytosol	9.0	17.65
CDY33155	Canola	cytosol	20.67	15.5

Protein Annotations

EnsemblPlants:CDY05690	EnsemblPlantsGene:GSBRNA2T00120695001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2	PFAM:PF05910
ProteinID:CDY05690	ProteinID:CDY05690.1	UniParc:UPI0004EDFB15	MapMan:35.2	:	:

Description

BnaC02g38470D

Coordinates

chrLK031963:+:939308..940276

Molecular Weight (calculated)

33786.3 Da

IEP (calculated)

8.805

GRAVY (calculated)

-0.206

Length

300 amino acids

Sequence
(BLAST)

001: MLSFRIPSIR TQPTAFAAKI TETTKTVAQL KSAATPTPHS TVTCGYQAHV AGFFRNITVL WSKNLMNHSL TVMVSSLDND MNYCCKIDLV KPWQFWSKRG
101: SKSFDVEGNF VEVFWDLRAA KLSGNGSPEP MSDYYVAIVS DEEVVLLLGD SKHKAYKRTK SRPALVEGFI YFKKESIFGK KTFSTRARFD EQRKEHEVVV
201: ESSNGGDDPE MWISVDGIVI MHVKNLQWKF RGNQMVLVDK THVMVYYDVH DWLFGSSEST ASSGLFVGGG SSPLSRYNSA SSGYGTLHDF CLFLYAWKVV

Best Arabidopsis Sequence Match ( AT5G48270.1 )
(BLAST)

001: MLSFRMPSIG SQPTAFAAKI TDNPKTVAQL KSAASPSPHS TVTCGYQAHV AGFFRNVTVL WSKNLMNHSL TVMVSSLDND MNYCCKIDLV KPWQFWSKRG
101: SKSFDVEGNF VEVFWDLRSA KLAGNGSPEP VSDYYVAVVS DEEVVLLLGD LKQKAYKRTK SRPALVEGFI YFKKESIFGK KTFSTRARFD EQRKEHEVVV
201: ESSNGAAEPE MWISVDGIVV VNVKNLQWKF RGNQMVMVDR TPVMVYYDVH DWLFASSETA ASSGLFLFKP VPVGAMVDES FSDAEEGDSG GGSSPLSRYN
301: SASSGFGPLH DFCLFLYAWK LE

Arabidopsis Description

DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9LUA7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.