Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27882 | Canola | nucleus | 99.66 | 99.66 |
| Bra015139.1-P | Field mustard | nucleus | 99.31 | 95.7 |
| AT2G04220.1 | Thale cress | cytosol | 92.44 | 87.62 |
| Solyc12g044670.1.1 | Tomato | plastid | 71.48 | 67.53 |
| PGSC0003DMT400069001 | Potato | plastid | 71.48 | 67.53 |
| VIT_12s0057g01390.t01 | Wine grape | mitochondrion | 70.45 | 65.71 |
| PGSC0003DMT400006698 | Potato | mitochondrion | 67.7 | 63.96 |
| KRH16994 | Soybean | cytosol | 66.32 | 63.28 |
| Solyc03g121220.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 67.7 | 61.95 |
| KRH72631 | Soybean | cytosol | 64.95 | 61.56 |
| CDX86317 | Canola | plastid | 63.57 | 60.26 |
| CDX85324 | Canola | plastid | 56.01 | 58.63 |
| CDY05690 | Canola | mitochondrion, plastid | 60.14 | 58.33 |
| CDY48744 | Canola | mitochondrion, plastid | 60.82 | 58.22 |
| CDY19961 | Canola | plastid | 61.17 | 58.17 |
| CDY00069 | Canola | plastid | 61.17 | 57.79 |
| KRG90008 | Soybean | plastid | 62.54 | 57.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.58 | 54.84 |
| GSMUA_Achr3P12010_001 | Banana | cytosol | 48.45 | 51.09 |
| Zm00001d015796_P001 | Maize | cytosol | 31.96 | 48.44 |
| Zm00001d053654_P001 | Maize | plastid | 45.7 | 44.93 |
| TraesCS6B01G189500.1 | Wheat | cytosol | 47.08 | 43.91 |
| TraesCS6D01G150500.1 | Wheat | nucleus | 46.74 | 43.45 |
| TraesCS6A01G161700.1 | Wheat | cytosol | 46.39 | 43.13 |
| OQU84582 | Sorghum | cytosol | 47.42 | 42.99 |
| HORVU6Hr1G032720.1 | Barley | cytosol | 46.39 | 42.86 |
| CDY30020 | Canola | cytosol, plastid | 37.8 | 39.01 |
| CDY66553 | Canola | cytosol | 37.8 | 39.01 |
| CDY21108 | Canola | plastid | 37.46 | 38.65 |
| CDY52485 | Canola | plastid | 38.83 | 38.57 |
| CDX86191 | Canola | plastid | 38.83 | 38.57 |
| CDY00013 | Canola | cytosol, plastid | 38.83 | 38.31 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 37.46 | 37.98 |
| CDX82547 | Canola | cytosol | 37.8 | 37.8 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 36.43 | 37.59 |
| Os02t0198800-01 | Rice | cytosol, nucleus | 44.33 | 34.68 |
| CDX85733 | Canola | cytosol, nucleus, plastid | 30.93 | 26.24 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 39.52 | 25.9 |
| CDY51100 | Canola | cytosol | 30.24 | 25.88 |
| CDX77134 | Canola | cytosol, plastid | 28.18 | 25.39 |
| CDY30531 | Canola | plastid | 27.15 | 24.09 |
| CDX69793 | Canola | nucleus | 30.93 | 23.94 |
| CDX97072 | Canola | nucleus | 31.27 | 23.51 |
| CDX84556 | Canola | cytosol | 25.43 | 23.05 |
| CDX79683 | Canola | cytosol | 25.09 | 23.03 |
| CDX76763 | Canola | plastid | 26.12 | 21.78 |
| CDY56275 | Canola | cytosol | 9.62 | 18.3 |
| CDY33155 | Canola | cytosol | 23.02 | 16.75 |
Protein Annotations
| EnsemblPlants:CDY00849 | EnsemblPlantsGene:GSBRNA2T00110788001 | GO:A0A078EJA0 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF2 |
| PFAM:PF05910 | ProteinID:CDY00849 | ProteinID:CDY00849.1 | SEG:seg | UniParc:UPI0004EF22BB | MapMan:35.2 |
Description
BnaCnng00490D
Coordinates
chrLK031922:+:639746..640660
Molecular Weight (calculated)
33589.8 Da
IEP (calculated)
8.779
GRAVY (calculated)
-0.425
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFRSHSTGS SQFAEKITDD PVTYKTAQST VTCIYQTHIS GFWRNVTVLW SKNLMNHSLT VMVTSVEGDM NYCCKVDLKP WHFWNKKGYK SFEVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVAEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKSFA TRAKFYDRKK EHEINVESSI SGTKEPEMWI
201: SIDGIVLVQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSAPGTGHGL FIFKPGTAED SDMEGRSRYH STKSGSWPPE FCLFLYAWKL E
101: VYWDFRSAKF TSSPEPSSDF YVALVAEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKSFA TRAKFYDRKK EHEINVESSI SGTKEPEMWI
201: SIDGIVLVQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSAPGTGHGL FIFKPGTAED SDMEGRSRYH STKSGSWPPE FCLFLYAWKL E
001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
Arabidopsis Description
DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.