Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28150.1 | CDX82685 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | CDX94377 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | CDY69293 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86191 | Canola | plastid | 91.53 | 92.15 |
| CDY52485 | Canola | plastid | 91.19 | 91.81 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 88.14 | 89.97 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 73.9 | 75.96 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 71.53 | 74.82 |
| CDY21108 | Canola | plastid | 71.19 | 74.47 |
| CDY30020 | Canola | cytosol, plastid | 69.83 | 73.05 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 66.44 | 68.77 |
| KRH68710 | Soybean | plastid | 66.44 | 65.99 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 66.78 | 65.45 |
| KRG96949 | Soybean | cytosol, plastid | 67.8 | 65.36 |
| KRG92651 | Soybean | cytosol | 66.1 | 65.0 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 97.29 | 64.64 |
| Solyc01g097790.2.1 | Tomato | cytosol | 63.05 | 62.21 |
| PGSC0003DMT400057872 | Potato | cytosol | 63.05 | 62.21 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 52.88 | 59.77 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 53.22 | 59.47 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 56.95 | 57.73 |
| Zm00001d013042_P001 | Maize | plastid | 56.61 | 57.39 |
| EER93250 | Sorghum | cytosol, plastid | 56.61 | 57.39 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 55.93 | 56.9 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 55.93 | 56.51 |
| TraesCS5A01G456500.1 | Wheat | plastid | 55.59 | 56.16 |
| Zm00001d034527_P001 | Maize | plastid | 54.92 | 55.1 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 54.92 | 52.6 |
| Os07t0572300-01 | Rice | plastid | 50.51 | 52.46 |
| HORVU2Hr1G038060.1 | Barley | plastid | 48.81 | 51.43 |
| TraesCS2D01G204300.1 | Wheat | plastid | 47.12 | 49.12 |
| TraesCS2B01G223900.1 | Wheat | plastid | 46.78 | 48.76 |
| TraesCS5B01G465500.1 | Wheat | plastid | 55.25 | 48.51 |
| TraesCS2A01G196200.1 | Wheat | plastid | 45.42 | 47.35 |
| Zm00001d021869_P001 | Maize | plastid | 45.42 | 47.18 |
| OQU90135 | Sorghum | plastid | 47.12 | 40.88 |
| CDY00849 | Canola | nucleus | 38.31 | 38.83 |
| CDY27882 | Canola | nucleus | 38.31 | 38.83 |
| CDX86317 | Canola | plastid | 34.58 | 33.22 |
| CDY48744 | Canola | mitochondrion, plastid | 34.24 | 33.22 |
| CDX85324 | Canola | plastid | 31.19 | 33.09 |
| CDY19961 | Canola | plastid | 34.24 | 33.01 |
| CDY05690 | Canola | mitochondrion, plastid | 33.56 | 33.0 |
| CDY00069 | Canola | plastid | 34.24 | 32.79 |
| CDX77134 | Canola | cytosol, plastid | 35.59 | 32.51 |
| CDY30531 | Canola | plastid | 34.24 | 30.79 |
| CDY66553 | Canola | cytosol | 29.15 | 30.5 |
| CDX82547 | Canola | cytosol | 29.15 | 29.55 |
| CDY51100 | Canola | cytosol | 30.51 | 26.47 |
| CDX85733 | Canola | cytosol, nucleus, plastid | 30.51 | 26.24 |
| CDX79683 | Canola | cytosol | 28.14 | 26.18 |
| CDX84556 | Canola | cytosol | 28.14 | 25.86 |
| CDX69793 | Canola | nucleus | 32.88 | 25.8 |
| CDX97072 | Canola | nucleus | 32.88 | 25.06 |
| CDX76763 | Canola | plastid | 26.1 | 22.06 |
| CDY56275 | Canola | cytosol | 10.85 | 20.91 |
| CDY33155 | Canola | cytosol | 26.44 | 19.5 |
Protein Annotations
| EnsemblPlants:CDY00013 | EnsemblPlantsGene:GSBRNA2T00109488001 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF40 | PFAM:PF05910 |
| ProteinID:CDY00013 | ProteinID:CDY00013.1 | SEG:seg | UniParc:UPI0004EE77FD | MapMan:35.2 | : |
Description
BnaC09g02880D
Coordinates
chrLK031916:+:229829..230891
Molecular Weight (calculated)
32459.0 Da
IEP (calculated)
8.889
GRAVY (calculated)
-0.058
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDFPSCFGE NGVQVADSSS SNSGKNAQNL VTCIYQCRIR GRTCLITVTW AKTLMGQSVT VGVDDSCNQS LCKVEIKPWL FTKRKGSKSL EVYSCSIDVV
101: WDLASAKFGS GPEALGGFYV GVVVDKEMVL LLGDMKKEAF KKTNASPSSR GAVFVAKKEH VFGKREFATK AQLCSDGVRI HDLVIECDTS VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNRMAVEV LWDVHSWLFG MPSSAGNAVF MFRTCQSSSD KSLSFSQDII ATTTTTNSKS QSSVFSLILY AWKNE
101: WDLASAKFGS GPEALGGFYV GVVVDKEMVL LLGDMKKEAF KKTNASPSSR GAVFVAKKEH VFGKREFATK AQLCSDGVRI HDLVIECDTS VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNRMAVEV LWDVHSWLFG MPSSAGNAVF MFRTCQSSSD KSLSFSQDII ATTTTTNSKS QSSVFSLILY AWKNE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.