Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G066800.6 | |
| HORVU5Hr1G094660.1 | |
| HORVU6Hr1G036020.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04860.1 | HORVU5Hr1G094660.1 | AT1G05410.1 | 21798944 |
| AT3G04860.1 | HORVU6Hr1G036020.1 | AT4G32190.1 | 21798944 |
| AT5G28150.1 | HORVU3Hr1G066800.6 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G456500.1 | Wheat | plastid | 97.6 | 97.6 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 96.58 | 91.56 |
| EER93250 | Sorghum | cytosol, plastid | 89.73 | 90.03 |
| Zm00001d013042_P001 | Maize | plastid | 88.7 | 89.0 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 88.7 | 89.0 |
| Zm00001d034527_P001 | Maize | plastid | 87.67 | 87.07 |
| TraesCS5B01G465500.1 | Wheat | plastid | 96.92 | 84.23 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 72.95 | 73.45 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 65.07 | 72.8 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 64.04 | 70.83 |
| VIT_07s0151g00930.t01 | Wine grape | cytosol, plastid | 65.07 | 63.33 |
| KRH71412 | Soybean | cytosol | 65.07 | 63.12 |
| KRH32026 | Soybean | cytosol, plastid | 64.73 | 63.0 |
| VIT_05s0020g03340.t01 | Wine grape | cytosol | 64.38 | 62.67 |
| Solyc01g097790.2.1 | Tomato | cytosol | 64.04 | 62.54 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 60.96 | 62.46 |
| PGSC0003DMT400057872 | Potato | cytosol | 63.7 | 62.21 |
| KRH68710 | Soybean | plastid | 62.67 | 61.62 |
| KRG95548 | Soybean | cytosol | 63.36 | 61.46 |
| KRG92651 | Soybean | cytosol | 62.67 | 61.0 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 62.33 | 60.47 |
| KRG96949 | Soybean | cytosol, plastid | 62.33 | 59.48 |
| HORVU2Hr1G038060.1 | Barley | plastid | 56.16 | 58.57 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 56.85 | 57.44 |
| AT3G04860.1 | Thale cress | plastid | 56.16 | 56.75 |
| Bra009991.1-P | Field mustard | plastid | 56.85 | 56.66 |
| CDX86191 | Canola | plastid | 56.85 | 56.66 |
| CDY52485 | Canola | plastid | 56.85 | 56.66 |
| KRH67230 | Soybean | cytosol | 60.62 | 56.55 |
| CDY00013 | Canola | cytosol, plastid | 56.51 | 55.93 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 57.19 | 55.12 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 56.85 | 54.79 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 51.37 | 53.19 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 52.05 | 53.15 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 52.05 | 52.96 |
| CDY30020 | Canola | cytosol, plastid | 50.34 | 52.13 |
| CDY21108 | Canola | plastid | 50.34 | 52.13 |
| Bra040118.1-P | Field mustard | plastid | 49.66 | 51.42 |
| Bra036119.1-P | Field mustard | mitochondrion | 56.51 | 43.19 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 56.51 | 37.16 |
| HORVU3Hr1G092470.1 | Barley | plastid | 40.07 | 37.14 |
| HORVU6Hr1G032720.1 | Barley | cytosol | 32.53 | 30.16 |
| HORVU7Hr1G058790.3 | Barley | plastid | 29.45 | 28.38 |
| HORVU5Hr1G041450.1 | Barley | plastid | 30.48 | 27.64 |
| HORVU4Hr1G001870.2 | Barley | cytosol | 29.45 | 25.0 |
| HORVU5Hr1G065520.1 | Barley | plastid | 31.16 | 20.13 |
| HORVU7Hr1G029920.1 | Barley | mitochondrion | 24.66 | 18.09 |
Protein Annotations
| EMBL:AK364675 | EnsemblPlants:HORVU5Hr1G109570.1 | EnsemblPlantsGene:HORVU5Hr1G109570 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF4 |
| PFAM:PF05910 | SEG:seg | UniParc:UPI0002006905 | UniProt:F2DLA7 | MapMan:35.2 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DLA7]
Coordinates
chrchr5H:+:630295535..630298073
Molecular Weight (calculated)
32124.6 Da
IEP (calculated)
8.192
GRAVY (calculated)
-0.035
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCFGE SGVQIADAAS SSSSAGKGAA QNLVTCLYQT QLAARPCVVS VTWSKSLMGQ GLSVAVDGLS GQSLCKADIK PWLFSKKKGS KSLDVDGGKV
101: DIFWDLSAAR FGAGPEPLEG FYVALVFDLE LALLLGDMNK DAYRKTGANR PALNAAFVAR KEHIYGKKIY SAKAQFCDNG QFHDLVIECD TVGLKDPCLE
201: IRIDKKPVMQ VKRLAWKFRG NQTILVDGLP VEVFWDVHSW LFGSTTTSNA VFMFQTCQAP EKSMPWSYSQ IFRESQLQGL GFSLILYAWK IE
101: DIFWDLSAAR FGAGPEPLEG FYVALVFDLE LALLLGDMNK DAYRKTGANR PALNAAFVAR KEHIYGKKIY SAKAQFCDNG QFHDLVIECD TVGLKDPCLE
201: IRIDKKPVMQ VKRLAWKFRG NQTILVDGLP VEVFWDVHSW LFGSTTTSNA VFMFQTCQAP EKSMPWSYSQ IFRESQLQGL GFSLILYAWK IE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.