Factsheet for Bra040410.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011328.1-P
Bra015422.1-P
Bra017007.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	Bra015422.1-P	AT1G05410.1	21798944
AT3G04860.1	Bra017007.1-P	AT2G19650.1	21798944
AT3G04860.1	Bra011328.1-P	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50761	Canola	cytosol, peroxisome, plastid	98.25	97.91
CDY72112	Canola	cytosol, peroxisome, plastid	91.26	92.55
AT3G04860.1	Thale cress	plastid	86.01	85.12
Bra040118.1-P	Field mustard	plastid	77.62	78.72
Bra009991.1-P	Field mustard	plastid	77.97	76.11
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	62.94	63.16
Solyc01g097790.2.1	Tomato	cytosol	62.94	60.2
PGSC0003DMT400057872	Potato	cytosol	62.94	60.2
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	62.59	59.47
KRG92651	Soybean	cytosol	62.24	59.33
KRH68710	Soybean	plastid	60.84	58.59
KRG96949	Soybean	cytosol, plastid	62.59	58.5
Bra036119.1-P	Field mustard	mitochondrion	76.57	57.33
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	51.05	55.94
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	51.4	55.68
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	55.94	54.98
EER93250	Sorghum	cytosol, plastid	54.9	53.95
GSMUA_Achr5P24690_001	Banana	cytosol	54.55	53.79
Zm00001d013042_P001	Maize	plastid	54.55	53.61
HORVU5Hr1G109570.1	Barley	cytosol, plastid	53.15	52.05
TraesCS5A01G456500.1	Wheat	plastid	52.45	51.37
Zm00001d034527_P001	Maize	plastid	52.8	51.36
Os07t0572300-01	Rice	plastid	48.95	49.3
TraesCS5D01G467300.1	Wheat	cytosol, plastid	52.45	48.7
HORVU2Hr1G038060.1	Barley	plastid	46.15	47.14
TraesCS2D01G204300.1	Wheat	plastid	46.15	46.64
TraesCS2B01G223900.1	Wheat	plastid	45.1	45.58
TraesCS2A01G196200.1	Wheat	plastid	44.76	45.23
Zm00001d021869_P001	Maize	plastid	44.41	44.72
TraesCS5B01G465500.1	Wheat	plastid	52.45	44.64
OQU90135	Sorghum	plastid	45.1	37.94
Bra015139.1-P	Field mustard	nucleus	38.46	36.42
Bra034367.1-P	Field mustard	plastid	36.71	32.31
Bra036180.1-P	Field mustard	plastid	35.31	31.37
Bra037498.1-P	Field mustard	plastid	35.31	31.27
Bra020708.1-P	Field mustard	mitochondrion	34.62	30.75
Bra001495.1-P	Field mustard	cytosol	27.97	27.49
Bra023071.1-P	Field mustard	cytosol	29.72	26.48
Bra028555.1-P	Field mustard	nucleus	31.12	25.95
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	33.92	25.0
Bra007811.1-P	Field mustard	plastid	27.27	22.29

Protein Annotations

EnsemblPlants:Bra040410.1	EnsemblPlants:Bra040410.1-P	EnsemblPlantsGene:Bra040410	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF40
PFAM:PF05910	UniParc:UPI000253ECFE	UniProt:M4FH32	MapMan:35.2	:	:

Description

AT3G04860 (E=2e-143) | unknown protein

Coordinates

chrScaffold000203:-:69908..70768

Molecular Weight (calculated)

31777.4 Da

IEP (calculated)

9.219

GRAVY (calculated)

-0.079

Length

286 amino acids

Sequence
(BLAST)

001: MRDFPSCSGE NGVQVANSPS STAGKTAQNL VICIYRCRIR GKTCLITVTW TKSLMGQCVT IGVDDSCNTS LCKVEIKPWL FTKRKGSKNL SNISVFWDLS
101: SAKFGSSPEP LGGFYVCVVV DKEMTLLLGD MRKEAFKKTN AAPSSSLGAV IMAKREHVFG KRTFETKAQF SNDGKTHDLV IECDVSVSDP CLVVLVDGKV
201: LMKVKRVHWK FRGNDTMVVD RISVEVIWDV HSWFFGLPSS PGHAVFMFRT CQQPVEKTWS FSQQVPTSSK SQSVGFSLVL YAWKNE

Best Arabidopsis Sequence Match ( AT3G04860.1 )
(BLAST)

001: MRDFPSCSGE NGVQIADSSS SSSAGRNAQN LVICIYRCRI RGRTCLITVT WTKNLMGQCV TVGVDDSCNR SLCKVEIKPW LFTKRKGSKT LEAYACNIDV
101: FWDLSSAKFG SSPEPLGGFY VGVVVDKEMV LLLGDMKKEA FKKTNAAPSS SLGAVFIAKK EHVFGKRTFA TKAQFSGDGK THDLVIECDT SLSDPCLIVR
201: VDGKILMQVQ RLHWKFRGND TIIVNRISVE VLWDVHSWFF GLPSSPGNAV FMFRTCQSVE KTWSFTQVPT SSKSQSFGFS LILYAWKNE

Arabidopsis Description

AT3g04860/T9J14_19 [Source:UniProtKB/TrEMBL;Acc:Q9CAV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.