Factsheet for Bra028555.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85733	Canola	cytosol, nucleus, plastid	97.38	97.38
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	81.92	72.42
AT5G11000.1	Thale cress	cytosol, plastid	81.05	71.47
PGSC0003DMT400068894	Potato	plastid	46.36	45.56
Solyc08g028780.1.1	Tomato	mitochondrion	44.61	45.13
KRH15788	Soybean	plastid	43.44	43.57
KRH52365	Soybean	plastid	41.98	43.24
KRH05263	Soybean	mitochondrion, plastid	42.86	43.24
KRH61697	Soybean	plastid	39.07	43.09
Bra007811.1-P	Field mustard	plastid	40.52	39.71
Bra040118.1-P	Field mustard	plastid	26.82	32.62
GSMUA_Achr9P13220_001	Banana	mitochondrion, peroxisome, plastid	35.86	32.37
GSMUA_Achr3P04550_001	Banana	plastid	24.49	31.58
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	25.95	31.12
Bra009991.1-P	Field mustard	plastid	26.53	31.06
Zm00001d032164_P001	Maize	plastid	36.44	30.94
Zm00001d050436_P001	Maize	plastid	36.73	30.88
Os08t0439600-00	Rice	plastid	35.57	30.05
TraesCS5A01G226100.1	Wheat	plastid	36.15	29.95
Bra015139.1-P	Field mustard	nucleus	26.24	29.8
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	35.28	29.73
TraesCS5D01G233300.1	Wheat	plastid	35.86	29.71
TraesCS5B01G224600.1	Wheat	plastid	35.86	29.71
EES13906	Sorghum	plastid	36.15	29.67
GSMUA_Achr5P22830_001	Banana	cytosol, nucleus, peroxisome	33.53	29.56
Os06t0181800-00	Rice	plastid	29.45	28.77
Zm00001d020470_P001	Maize	plastid	34.99	28.5
Zm00001d005752_P001	Maize	plastid	34.99	28.5
TraesCS7A01G146000.1	Wheat	plastid	27.99	28.15
Os09t0416600-02	Rice	plastid	36.15	27.93
Zm00001d045119_P001	Maize	plastid	28.57	27.92
Bra001495.1-P	Field mustard	cytosol	23.62	27.84
EER87970	Sorghum	plastid	28.86	27.58
HORVU5Hr1G065520.1	Barley	plastid	36.15	27.43
KXG35635	Sorghum	plastid	35.57	27.35
Bra036180.1-P	Field mustard	plastid	25.36	27.02
Bra037498.1-P	Field mustard	plastid	24.49	26.01
Bra020708.1-P	Field mustard	mitochondrion	24.2	25.78
Bra034367.1-P	Field mustard	plastid	24.2	25.54
TraesCS7B01G048400.1	Wheat	plastid	28.57	24.94
TraesCS7D01G147500.1	Wheat	plastid	28.28	24.68
Bra036119.1-P	Field mustard	mitochondrion	26.82	24.08
Bra023071.1-P	Field mustard	cytosol	22.16	23.68
HORVU7Hr1G029920.1	Barley	mitochondrion	27.41	23.62
Os02t0695050-00	Rice	extracellular, golgi, mitochondrion	14.87	19.62
Zm00001d037575_P001	Maize	cytosol	13.12	18.67

Protein Annotations

EnsemblPlants:Bra028555.1	EnsemblPlants:Bra028555.1-P	EnsemblPlantsGene:Bra028555	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF3
PFAM:PF05910	SEG:seg	UniParc:UPI000254346D	UniProt:M4EIE0	MapMan:35.2	:

Description

AT5G11000 (E=3e-111) | unknown protein

Coordinates

chrA02:+:1060733..1061764

Molecular Weight (calculated)

37978.1 Da

IEP (calculated)

9.545

GRAVY (calculated)

-0.244

Length

343 amino acids

Sequence
(BLAST)

001: MSPSPSRSPI VSGDPNLTTC LYQTDHGVFY LTWSRTFLGG HSLNLFLHSQ DYYNSHSSPL SFPSLSSLAS FHLSLNTLTF WRKRGSKFIS SNIQVLWDLT
101: RAKFESGSEP RSGFYVAVIV DGEVGLLVGD CGDARVKSPA NRQALVMRKE HVFGGSVFAT KARFGGKNRA IKIDCCVDED ARLCFCVDSK MVLEVKRLRW
201: KFRGNERVEI DGVAVQISWD VYNWLFQGKS LGHGVFMFRF ESDPEEREGS GNDVVLWKPR KCGSGFKGMV EWRKMRRRFV KSKRSSSSSS LSMSMSSASS
301: ACSSSVLEWA SSADESEYGG GGSSGLGSGN GLGFSLLVYA WIK

Best Arabidopsis Sequence Match ( AT5G11000.1 )
(BLAST)

001: MSPSWLRPTA DHNHPPPQPP SQSPSPLSSG DPNLTTCLYQ TDHGVFYLTW SRTFLGGHSV NLFLHSQDYY NHSSPLSFSS ADLSLSSAVS FHLNLNTLAF
101: WKKRGSRFVS PKIQVFWDLS KAKFDSGSEP RSGFYIAVVV DGEMGLLVGD SVKEAYARAK SAKPPTNPQA LLLRKEHVFG ARVFTTKARF GGKNREISID
201: CRVDEDAKLC FSVDSKQVLQ IKRLRWKFRG NEKVEIDGVH VQISWDVYNW LFQSKSSGDG GGGGGHAVFM FRFESDPEAE EVCETKRKEE EDEKNRNGIV
301: LWKPKKQCGN SFGIKGIVEW RKMRKRFVKS KRSSSSSSIS MSSASSACSS SVMEWASSAD EAEYGGGGCS GSGSGNGLGF SLLVYAWIK

Arabidopsis Description

AT5g11000/T30N20_270 [Source:UniProtKB/TrEMBL;Acc:Q9LEU1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.