Factsheet for Bra036119.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
peroxisome 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013949.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28150.1	Bra013949.1-P	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009991.1-P	Field mustard	plastid	70.94	92.49
AT5G28150.1	Thale cress	cytosol, plastid	68.85	91.0
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	97.38	83.78
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	57.33	76.57
Bra040118.1-P	Field mustard	plastid	55.76	75.53
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	51.05	68.42
KRH68710	Soybean	plastid	50.52	64.98
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	51.05	64.78
KRG96949	Soybean	cytosol, plastid	51.57	64.38
KRG92651	Soybean	cytosol	50.52	64.33
PGSC0003DMT400057872	Potato	cytosol	48.95	62.54
Solyc01g097790.2.1	Tomato	cytosol	48.95	62.54
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	41.36	60.54
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	41.36	59.85
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	43.98	57.73
Zm00001d013042_P001	Maize	plastid	43.72	57.39
EER93250	Sorghum	cytosol, plastid	43.72	57.39
GSMUA_Achr5P24690_001	Banana	cytosol	43.19	56.9
HORVU5Hr1G109570.1	Barley	cytosol, plastid	43.19	56.51
TraesCS5A01G456500.1	Wheat	plastid	42.93	56.16
Zm00001d034527_P001	Maize	plastid	42.41	55.1
Os07t0572300-01	Rice	plastid	39.53	53.17
TraesCS5D01G467300.1	Wheat	cytosol, plastid	42.41	52.6
HORVU2Hr1G038060.1	Barley	plastid	38.22	52.14
TraesCS2D01G204300.1	Wheat	plastid	36.91	49.82
TraesCS2B01G223900.1	Wheat	plastid	36.65	49.47
TraesCS5B01G465500.1	Wheat	plastid	42.67	48.51
TraesCS2A01G196200.1	Wheat	plastid	35.6	48.06
Zm00001d021869_P001	Maize	plastid	35.34	47.54
OQU90135	Sorghum	plastid	36.65	41.18
Bra015139.1-P	Field mustard	nucleus	30.37	38.41
Bra034367.1-P	Field mustard	plastid	27.23	32.0
Bra037498.1-P	Field mustard	plastid	26.96	31.89
Bra036180.1-P	Field mustard	plastid	26.7	31.68
Bra020708.1-P	Field mustard	mitochondrion	26.18	31.06
Bra001495.1-P	Field mustard	cytosol	21.99	28.87
Bra028555.1-P	Field mustard	nucleus	24.08	26.82
Bra023071.1-P	Field mustard	cytosol	21.47	25.55
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	25.92	25.52
Bra007811.1-P	Field mustard	plastid	20.68	22.57

Protein Annotations

EnsemblPlants:Bra036119.1	EnsemblPlants:Bra036119.1-P	EnsemblPlantsGene:Bra036119	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF40
PFAM:PF05910	SEG:seg	UniParc:UPI0002541F42	UniProt:M4F4W5	MapMan:35.2	:

Description

AT5G28150 (E=2e-140) | unknown protein

Coordinates

chrA09:-:2625736..2629426

Molecular Weight (calculated)

42237.9 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.131

Length

382 amino acids

Sequence
(BLAST)

001: MCTTLHVKGI KTKKKNILPL LWRFASSSLS LLTLRLLSKS LFLGDNGSNQ RDSYEDSSDS DAFLIHLSLQ SSALRSLPTK CSSKFRREMK DFPSCFGENG
101: VQVADSSSSN SGKNAQNLVT CIYQFRIRGR TCLITVTWAK TLMGQSVTVG VDDSCNQSLC KVEIKPWLFT KRKGSKSLEV YSCSIDVVWD LASAKFGSGP
201: EALGGFYVGV VVDKEMVLLL GDMKKEAFKK TNASPSSRGA VFIAKKEHVF GKREFATKAQ LCSDGVKVHD LVIECDTSVT DPCLVVRVDG KTLLQVKRLK
301: WKFRGNDTIV VNRMAVEVLW DVHSWLFGMP SSAGNAVFMF RTCQSSSDKS LSFSQDVMTT TTTNSKSQSS GFSLILYAWK NE

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.