Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 75.0 | 75.86 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 75.0 | 68.28 |
| Zm00001d013042_P001 | Maize | plastid | 71.97 | 65.29 |
| EER93250 | Sorghum | cytosol, plastid | 71.59 | 64.95 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 70.83 | 64.04 |
| TraesCS5A01G456500.1 | Wheat | plastid | 70.83 | 64.04 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 70.45 | 63.92 |
| Zm00001d034527_P001 | Maize | plastid | 70.45 | 63.27 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 65.91 | 61.05 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 70.08 | 60.06 |
| VIT_05s0020g03340.t01 | Wine grape | cytosol | 67.8 | 59.67 |
| VIT_07s0151g00930.t01 | Wine grape | cytosol, plastid | 67.42 | 59.33 |
| KRG95548 | Soybean | cytosol | 66.29 | 58.14 |
| KRH68710 | Soybean | plastid | 65.15 | 57.91 |
| KRH32026 | Soybean | cytosol, plastid | 65.53 | 57.67 |
| KRH71412 | Soybean | cytosol | 65.53 | 57.48 |
| Solyc01g097790.2.1 | Tomato | cytosol | 64.39 | 56.86 |
| KRG96949 | Soybean | cytosol, plastid | 65.53 | 56.54 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 64.39 | 56.48 |
| PGSC0003DMT400057872 | Potato | cytosol | 63.64 | 56.19 |
| KRG92651 | Soybean | cytosol | 63.26 | 55.67 |
| TraesCS5B01G465500.1 | Wheat | plastid | 70.83 | 55.65 |
| CDY52485 | Canola | plastid | 60.98 | 54.95 |
| CDX86191 | Canola | plastid | 60.98 | 54.95 |
| Bra009991.1-P | Field mustard | plastid | 60.98 | 54.95 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 62.12 | 54.13 |
| AT3G04860.1 | Thale cress | plastid | 59.09 | 53.98 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 61.74 | 53.8 |
| Os07t0572300-01 | Rice | plastid | 57.58 | 53.52 |
| KRH67230 | Soybean | cytosol | 63.26 | 53.35 |
| CDY00013 | Canola | cytosol, plastid | 59.47 | 53.22 |
| TraesCS2B01G223900.1 | Wheat | plastid | 56.82 | 53.0 |
| TraesCS2D01G204300.1 | Wheat | plastid | 56.82 | 53.0 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 57.95 | 52.94 |
| HORVU2Hr1G038060.1 | Barley | plastid | 55.68 | 52.5 |
| TraesCS2A01G196200.1 | Wheat | plastid | 55.3 | 51.59 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 55.68 | 51.4 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 54.55 | 51.06 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 54.92 | 50.52 |
| Zm00001d021869_P001 | Maize | plastid | 53.41 | 49.65 |
| CDY21108 | Canola | plastid | 52.27 | 48.94 |
| CDY30020 | Canola | cytosol, plastid | 52.27 | 48.94 |
| Bra040118.1-P | Field mustard | plastid | 51.52 | 48.23 |
| OQU90135 | Sorghum | plastid | 56.06 | 43.53 |
| Bra036119.1-P | Field mustard | mitochondrion | 59.85 | 41.36 |
| GSMUA_AchrUn_... | Banana | plastid | 40.15 | 37.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.88 | 35.84 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 59.47 | 35.36 |
| GSMUA_Achr3P12010_001 | Banana | cytosol | 34.47 | 32.97 |
| GSMUA_Achr10P... | Banana | cytosol | 38.26 | 31.76 |
| GSMUA_Achr11P... | Banana | plastid | 32.95 | 30.0 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 32.95 | 29.59 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 34.09 | 29.51 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 32.95 | 29.49 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 31.82 | 29.17 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 33.71 | 29.09 |
| GSMUA_Achr9P13220_001 | Banana | mitochondrion, peroxisome, plastid | 32.95 | 22.89 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plastid | 34.47 | 22.36 |
| GSMUA_Achr5P22830_001 | Banana | cytosol, nucleus, peroxisome | 31.44 | 21.34 |
| GSMUA_Achr3P04550_001 | Banana | plastid | 18.18 | 18.05 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P01840_001 | EnsemblPlants:GSMUA_Achr7T01840_001 | EnsemblPlantsGene:GSMUA_Achr7G01840_001 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF4 |
| PFAM:PF05910 | UniParc:UPI00029634F7 | UniProt:M0TDX4 | MapMan:35.2 | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G01840_001]
Coordinates
chr7:-:1422203..1423063
Molecular Weight (calculated)
29392.6 Da
IEP (calculated)
8.947
GRAVY (calculated)
-0.076
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCFGE SGIQVSDSSS GGAVKNAHNL VTYFYRARRG GRSCVVACLC KVDIKPWLFS KRKGSKSLEV ESSKVDIVWD LSAAKFGPGP EPLQGYYVAV
101: VFDLQMVLLL GDLAKEAYRK TAAVPSTSNM AFVAKREHIS GKNLYCTKAQ FCDNGKSHDV VIECDTVGLK DPCLEIHIDK KRVMQVKRLA WKFRGNQTIL
201: IDGLPVEVFW DVHSWLFGVP GGNAVFMFQS CPSAEKLLPW FQGFKQSQLQ GVGFSLILHA WKNE
101: VFDLQMVLLL GDLAKEAYRK TAAVPSTSNM AFVAKREHIS GKNLYCTKAQ FCDNGKSHDV VIECDTVGLK DPCLEIHIDK KRVMQVKRLA WKFRGNQTIL
201: IDGLPVEVFW DVHSWLFGVP GGNAVFMFQS CPSAEKLLPW FQGFKQSQLQ GVGFSLILHA WKNE
001: MRDFPSCSGE NGVQIADSSS SSSAGRNAQN LVICIYRCRI RGRTCLITVT WTKNLMGQCV TVGVDDSCNR SLCKVEIKPW LFTKRKGSKT LEAYACNIDV
101: FWDLSSAKFG SSPEPLGGFY VGVVVDKEMV LLLGDMKKEA FKKTNAAPSS SLGAVFIAKK EHVFGKRTFA TKAQFSGDGK THDLVIECDT SLSDPCLIVR
201: VDGKILMQVQ RLHWKFRGND TIIVNRISVE VLWDVHSWFF GLPSSPGNAV FMFRTCQSVE KTWSFTQVPT SSKSQSFGFS LILYAWKNE
101: FWDLSSAKFG SSPEPLGGFY VGVVVDKEMV LLLGDMKKEA FKKTNAAPSS SLGAVFIAKK EHVFGKRTFA TKAQFSGDGK THDLVIECDT SLSDPCLIVR
201: VDGKILMQVQ RLHWKFRGND TIIVNRISVE VLWDVHSWFF GLPSSPGNAV FMFRTCQSVE KTWSFTQVPT SSKSQSFGFS LILYAWKNE
Arabidopsis Description
AT3g04860/T9J14_19 [Source:UniProtKB/TrEMBL;Acc:Q9CAV2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.