Factsheet for Zm00001d021869_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011696_P002
Zm00001d034000_P002
Zm00001d043693_P002
Zm00001d053726_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	Zm00001d034000_P002	AT1G05410.1	21798944
AT3G04860.1	Zm00001d053726_P001	AT4G32190.1	21798944
AT5G28150.1	Zm00001d011696_P002	AT4G26100.1	21798944
AT5G28150.1	Zm00001d043693_P002	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0572300-01	Rice	plastid	75.35	75.35
OQU90135	Sorghum	plastid	90.14	75.29
TraesCS2D01G204300.1	Wheat	plastid	71.48	71.73
TraesCS2B01G223900.1	Wheat	plastid	70.77	71.02
TraesCS2A01G196200.1	Wheat	plastid	70.77	71.02
HORVU2Hr1G038060.1	Barley	plastid	69.01	70.0
GSMUA_Achr5P24690_001	Banana	cytosol	56.69	55.52
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	50.7	55.17
Zm00001d034527_P001	Maize	plastid	56.34	54.42
Zm00001d013042_P001	Maize	plastid	55.28	53.95
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	49.65	53.41
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	54.93	52.0
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	51.06	50.88
KRH71412	Soybean	cytosol	53.87	50.83
KRH32026	Soybean	cytosol, plastid	53.17	50.33
VIT_05s0020g03340.t01	Wine grape	cytosol	52.82	50.0
Solyc01g097790.2.1	Tomato	cytosol	52.11	49.5
PGSC0003DMT400057872	Potato	cytosol	52.11	49.5
KRG92651	Soybean	cytosol	52.11	49.33
KRG95548	Soybean	cytosol	51.76	48.84
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	51.41	48.51
AT5G28150.1	Thale cress	cytosol, plastid	48.59	47.75
KRH68710	Soybean	plastid	49.3	47.14
CDY52485	Canola	plastid	48.24	46.76
AT3G04860.1	Thale cress	plastid	47.54	46.71
Bra009991.1-P	Field mustard	plastid	47.89	46.42
CDX86191	Canola	plastid	47.89	46.42
Bra040118.1-P	Field mustard	plastid	45.77	46.1
KRG96949	Soybean	cytosol, plastid	49.65	46.08
CDY21108	Canola	plastid	45.42	45.74
CDY50761	Canola	cytosol, peroxisome, plastid	46.13	45.64
CDY00013	Canola	cytosol, plastid	47.18	45.42
CDY30020	Canola	cytosol, plastid	45.07	45.39
CDY72112	Canola	cytosol, peroxisome, plastid	44.37	44.68
KRH67230	Soybean	cytosol	48.94	44.41
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	44.72	44.41
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	46.83	43.89
Solyc09g075960.1.1	Tomato	nucleus, peroxisome, plasma membrane	46.48	43.56
Zm00001d015796_P001	Maize	cytosol	25.7	38.02
Bra036119.1-P	Field mustard	mitochondrion	47.54	35.34
Zm00001d035694_P001	Maize	cytosol	35.56	33.22
Zm00001d053654_P001	Maize	plastid	34.51	33.11
Zm00001d042425_P001	Maize	plastid	33.8	30.87
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	47.89	30.63
Zm00001d025337_P001	Maize	cytosol	32.75	26.96
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	32.04	26.45
Zm00001d052520_P001	Maize	plastid	28.17	25.08
Zm00001d004919_P001	Maize	plastid	28.52	25.08
Zm00001d031962_P001	Maize	plastid	25.7	23.1
Zm00001d032164_P001	Maize	plastid	29.23	20.54
Zm00001d050436_P001	Maize	plastid	28.87	20.1
Zm00001d045119_P001	Maize	plastid	24.65	19.94
Zm00001d020470_P001	Maize	plastid	27.46	18.53
Zm00001d005752_P001	Maize	plastid	26.06	17.58
Zm00001d037575_P001	Maize	cytosol	9.51	11.2

Protein Annotations

EMBL:BT037717	EMBL:BT060576	EnsemblPlants:Zm00001d021869_P001	EnsemblPlants:Zm00001d021869_T001	EnsemblPlantsGene:Zm00001d021869	EntrezGene:100275698
InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF15	PFAM:PF05910	ProteinID:ONM58919.1	SEG:seg
UniParc:UPI00017B6A0B	UniProt:B4FKS9	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7:+:164995427..164996281

Molecular Weight (calculated)

31949.7 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.073

Length

284 amino acids

Sequence
(BLAST)

001: MRDFASCLNQ SAVQVAHSSS SSGQNFVQSA YVARLRDKPC VVTVTWSKVA MGQAFAIAIH DYSNRCLCKA EVKPWLFSKR KGSKVMELDS GNVEIIWDLS
101: AAKFAAGPEP LEGFHVALLY GLEVVLVLGN LSKEEDHRVL SDASHCDAVM IARKEHIYAK KMYSAKARFL DIGQIHHISI ECDMAGVRDP CLEIRIDKKK
201: VLHLKRLAWK FRGNQTIYVD GLPVEVLWDV HDWLFGSTNG CAVFLFQSGQ SMEKILFRTC SQNEKEAEAH RLGFTLILKA WKTE

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.