Factsheet for Zm00001d034000_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004927_P001
Zm00001d006467_P002
Zm00001d014925_P001
Zm00001d021596_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Zm00001d006467_P002	AT4G21990.1	21798944
AT1G05410.1	Zm00001d021596_P001	AT4G21990.1	21798944
AT1G05410.1	Zm00001d004927_P001	AT5G49210.1	21798944
AT1G05410.1	Zm00001d014925_P001	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90880	Sorghum	cytosol	83.81	84.42
Os03t0747200-01	Rice	cytosol	40.61	62.17
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	57.37	56.88
TraesCS5B01G390300.3	Wheat	cytosol	57.23	56.73
TraesCS5A01G385300.3	Wheat	cytosol	57.08	56.59
PGSC0003DMT400041923	Potato	cytosol	10.12	45.75
GSMUA_Achr7P27170_001	Banana	cytosol	32.37	44.98
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	11.13	44.51
PGSC0003DMT400082107	Potato	cytosol	27.6	40.99
Solyc09g061580.1.1	Tomato	cytosol	6.5	38.79
HORVU5Hr1G094660.1	Barley	plastid	25.29	38.72
PGSC0003DMT400092399	Potato	cytosol	12.72	37.45
AT1G05410.1	Thale cress	cytosol	25.29	37.16
Solyc09g061540.1.1	Tomato	cytosol	6.21	37.07
KRG99083	Soybean	nucleus	26.01	36.96
CDY10107	Canola	cytosol	25.14	36.94
VIT_05s0020g03600.t01	Wine grape	cytosol	26.3	36.84
KRH77849	Soybean	nucleus	25.43	36.67
PGSC0003DMT400077585	Potato	cytosol	10.26	36.6
CDY47288	Canola	cytosol	24.57	36.09
KRH27646	Soybean	cytosol, nucleus	24.86	36.06
Bra015422.1-P	Field mustard	cytosol	24.42	36.03
PGSC0003DMT400059456	Potato	cytosol	17.49	34.18
PGSC0003DMT400090844	Potato	cytosol	5.78	33.33
PGSC0003DMT400077583	Potato	nucleus	18.21	31.03
PGSC0003DMT400077587	Potato	nucleus	12.14	17.0
CDY10650	Canola	nucleus	13.29	15.81
Bra039958.1-P	Field mustard	nucleus	13.29	15.49
CDY34248	Canola	nucleus	13.15	15.4
PGSC0003DMT400082110	Potato	nucleus	10.98	15.35
Bra023822.1-P	Field mustard	nucleus	13.01	15.25
CDY10289	Canola	nucleus	12.86	15.03
CDX98211	Canola	nucleus	12.72	14.97
AT4G14840.1	Thale cress	nucleus	11.85	14.77
KRH76190	Soybean	nucleus	9.68	14.69
KRH76186	Soybean	nucleus	9.68	14.69
CDY24312	Canola	nucleus	11.85	14.41
Bra001870.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.56	14.36
AT3G22520.1	Thale cress	nucleus	12.43	14.33
CDX92945	Canola	nucleus	11.71	14.29
CDY06487	Canola	nucleus	10.84	13.91
Bra037070.1-P	Field mustard	nucleus	10.4	13.82
CDY08296	Canola	nucleus	10.4	13.82
VIT_05s0020g03590.t01	Wine grape	nucleus	10.69	13.75
CDY38302	Canola	nucleus	13.15	13.21
KRH33505	Soybean	nucleus	10.84	13.04
KRG90260	Soybean	nucleus	8.67	12.77
VIT_17s0000g05270.t01	Wine grape	nucleus	7.8	12.5
KRH65951	Soybean	plastid	6.07	12.17
VIT_12s0035g02120.t01	Wine grape	nucleus	5.78	9.03

Protein Annotations

EMBL:BT087283	EnsemblPlants:Zm00001d034000_P002	EnsemblPlants:Zm00001d034000_T002	EnsemblPlantsGene:Zm00001d034000	EntrezGene:100502172	InterPro:Myb/SANT-like_dom
InterPro:Oberon_PHD	ncoils:Coil	PANTHER:PTHR31704	PANTHER:PTHR31704:SF65	PFAM:PF07227	PFAM:PF12776
ProteinID:ONM09159.1	ProteinID:ONM09161.1	ProteinID:ONM09162.1	UniParc:UPI0001A4C42F	UniProt:C4J8Y6	MapMan:35.2

Description

No Description!

Coordinates

chr1:-:280700224..280706334

Molecular Weight (calculated)

78106.0 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.534

Length

692 amino acids

Sequence
(BLAST)

001: MSPNKSGHAS GRDAVFWSDR MNEYLIDSLL HQQAIGNRSE SKFSSVAYDS IITGVGERFG VVIDRNNIKN RLKHIKESFN ECRNLLGEDN RFRWCPESRR
101: FNADPNVWRE LIERKPEAKK WMMKTIDHYD SLMDLFGKNR EKRQDVENSK GTSKKKARTE PPKEILQRTP LNRKGSALAE SSDKTVDKCE IHDEIKTNVE
201: LDLSESCRTD NGIVAIPVRA YSYGKGLPYA PENWPRHGDI WHWKVGSRAS GAGHWADRYI MPPSRFRGAA PKKLGFASRG FASRLQVEEF VKREFPDVDP
301: STFFSMFIWK IPAEGYRIQK GTRQVRIHEP EPVVADPGGL CKARNSLCNL QREGFVESSP ARVCNICCKE PGFCRECCCL LCNRTVDYSL GSYSCIKCEA
401: VVEENLICGH FAHLECALRC YMAGTVGGSF GLDVQYLCRL CDNKTNLMTH VEKLMETCQS LESRDQIKPM LNLGLCLLRG SKQMRARNLE NHMRSAMEKL
501: ECGFDFVEVW KLEGDEGRTT LNAGENSPTT NGVTVLGARQ VPEAGALTGH PDLIDPLVDN DFETVIENLP VFITGDQNAA SAKFEDEIDL ALQELKKSQE
601: AEYSVAEQKL YAQKDHILCL YRQLDAERAE LADPMPLSDA SNYGAMLANV LSRVDQVKRE EEKFRSMLKV AGGFAKAPQS VTREMFGLPA DK

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.