Factsheet for PGSC0003DMT400041923

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011414
PGSC0003DMT400013022
PGSC0003DMT400040750
PGSC0003DMT400042488
PGSC0003DMT400051168
PGSC0003DMT400075540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	PGSC0003DMT400013022	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400042488	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400051168	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400040750	AT5G49210.1	21798944
AT1G05410.1	PGSC0003DMT400011414	AT5G61230.1	21798944
AT1G05410.1	PGSC0003DMT400075540	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	88.89	78.61
Solyc06g054180.1.1	Tomato	cytosol	79.74	49.39
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	79.74	48.41
PGSC0003DMT400092399	Potato	cytosol	70.59	45.96
PGSC0003DMT400077585	Potato	cytosol	48.37	38.14
PGSC0003DMT400059456	Potato	cytosol	74.51	32.2
PGSC0003DMT400077583	Potato	nucleus	71.24	26.85
PGSC0003DMT400082107	Potato	cytosol	61.44	20.17
CDY10107	Canola	cytosol	58.17	18.9
Bra015422.1-P	Field mustard	cytosol	57.52	18.76
CDY47288	Canola	cytosol	57.52	18.68
AT1G05410.1	Thale cress	cytosol	57.52	18.68
GSMUA_Achr7P27170_001	Banana	cytosol	57.52	17.67
VIT_05s0020g03600.t01	Wine grape	cytosol	56.21	17.41
KRH27646	Soybean	cytosol, nucleus	52.94	16.98
KRG99083	Soybean	nucleus	52.94	16.63
KRH77849	Soybean	nucleus	51.63	16.46
Os03t0747200-01	Rice	cytosol	48.37	16.37
PGSC0003DMT400077587	Potato	nucleus	51.63	15.99
HORVU5Hr1G094660.1	Barley	plastid	43.79	14.82
TraesCS5B01G390300.3	Wheat	cytosol	51.63	11.32
TraesCS5A01G385300.3	Wheat	cytosol	50.33	11.03
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	50.33	11.03
EER90880	Sorghum	cytosol	47.06	10.48
Zm00001d034000_P002	Maize	cytosol	45.75	10.12
PGSC0003DMT400082110	Potato	nucleus	7.19	2.22
PGSC0003DMT400090844	Potato	cytosol	1.31	1.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400041923	EnsemblPlantsGene:PGSC0003DMG400016262	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
PGSC:PGSC0003DMG400016262	UniParc:UPI000294EAFA	UniProt:M1BC75	MapMan:35.2	:	:

Description

CDPK adapter protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016262]

Coordinates

chr6:-:40408827..40409456

Molecular Weight (calculated)

16796.3 Da

IEP (calculated)

5.552

GRAVY (calculated)

0.190

Length

153 amino acids

Sequence
(BLAST)

001: CDLCCSEPGF CGDCCCILCR KLITLDYDGK LITSDYDGYS YIRCEATVVD GHICGHVSHL ECALRAYMAG TVGGSINLDA EYLCRYCDTR TDLVPHALKL
101: LNICTSVASY ADIEKILNVG ICILRGSQKS SAKELLHRIE SINAKFLGLQ LQE

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.