Factsheet for GSMUA_Achr7P27170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P11210_001
GSMUA_Achr2P13890_001
GSMUA_Achr9P23190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	GSMUA_Achr2P13890_001	AT4G21990.1	21798944
AT1G05410.1	GSMUA_Achr1P11210_001	AT5G49210.1	21798944
AT1G05410.1	GSMUA_Achr9P23190_001	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041923	Potato	cytosol	17.67	57.52
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	19.28	55.49
PGSC0003DMT400082107	Potato	cytosol	42.57	45.49
AT1G05410.1	Thale cress	cytosol	42.77	45.22
Os03t0747200-01	Rice	cytosol	40.36	44.47
PGSC0003DMT400092399	Potato	cytosol	20.88	44.26
Solyc09g061580.1.1	Tomato	cytosol	10.24	43.97
CDY10107	Canola	cytosol	41.57	43.95
Bra015422.1-P	Field mustard	cytosol	41.16	43.71
CDY47288	Canola	cytosol	41.16	43.52
Solyc09g061540.1.1	Tomato	cytosol	10.04	43.1
VIT_05s0020g03600.t01	Wine grape	cytosol	42.57	42.91
PGSC0003DMT400077585	Potato	cytosol	16.47	42.27
PGSC0003DMT400059456	Potato	cytosol	29.52	41.53
KRH77849	Soybean	nucleus	37.95	39.38
KRG99083	Soybean	nucleus	38.35	39.22
KRH27646	Soybean	cytosol, nucleus	37.35	38.99
PGSC0003DMT400077583	Potato	nucleus	30.12	36.95
PGSC0003DMT400090844	Potato	cytosol	8.03	33.33
Zm00001d034000_P002	Maize	cytosol	44.98	32.37
EER90880	Sorghum	cytosol	43.57	31.59
TraesCS5A01G385300.3	Wheat	cytosol	43.98	31.38
TraesCS5B01G390300.3	Wheat	cytosol	43.78	31.23
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	43.37	30.95
HORVU5Hr1G094660.1	Barley	plastid	27.71	30.53
PGSC0003DMT400077587	Potato	nucleus	18.27	18.42
KRH76186	Soybean	nucleus	15.06	16.45
KRH76190	Soybean	nucleus	15.06	16.45
PGSC0003DMT400082110	Potato	nucleus	15.66	15.76
VIT_05s0020g03590.t01	Wine grape	nucleus	16.67	15.43
KRG90260	Soybean	nucleus	14.46	15.32
CDY08296	Canola	nucleus	15.86	15.16
Bra037070.1-P	Field mustard	nucleus	15.86	15.16
KRH65951	Soybean	plastid	10.24	14.78
CDY06487	Canola	nucleus	15.26	14.1
CDY10650	Canola	nucleus	16.27	13.92
Bra001870.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.46	13.82
AT3G22520.1	Thale cress	nucleus	16.47	13.67
CDX92945	Canola	nucleus	15.46	13.58
CDY24312	Canola	nucleus	15.46	13.53
CDY10289	Canola	nucleus	16.06	13.51
CDX98211	Canola	nucleus	15.86	13.44
Bra039958.1-P	Field mustard	nucleus	15.86	13.3
CDY34248	Canola	nucleus	15.66	13.2
AT4G14840.1	Thale cress	nucleus	14.66	13.15
Bra023822.1-P	Field mustard	nucleus	15.46	13.05
KRH33505	Soybean	nucleus	14.66	12.7
CDY38302	Canola	nucleus	15.66	11.32
VIT_17s0000g05270.t01	Wine grape	nucleus	9.44	10.88
VIT_12s0035g02120.t01	Wine grape	nucleus	7.63	8.58

Protein Annotations

EnsemblPlants:GSMUA_Achr7P27170_001	EnsemblPlants:GSMUA_Achr7T27170_001	EnsemblPlantsGene:GSMUA_Achr7G27170_001	InterPro:Oberon_PHD	ncoils:Coil	PANTHER:PTHR33345
PANTHER:PTHR33345:SF2	PFAM:PF07227	UniParc:UPI00029546D7	UniProt:M0TL53	MapMan:35.2	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G27170_001]

Coordinates

chr7:-:28290565..28295940

Molecular Weight (calculated)

56003.4 Da

IEP (calculated)

6.039

GRAVY (calculated)

-0.468

Length

498 amino acids

Sequence
(BLAST)

001: MDDGSNCHPS PVKENRLVAV PVVAGSSGLG LPYAPEDWPC PGDRWRWKVG SRKSSSGHWV DRYLYAPPTC PKSGGRRHGN GFPSRVSVEE YIRKEFPDAD
101: VNAFFSSFIW RVPCADFTPQ KENDNYACSY SRSFDTNERT KCELAIGPGD CKAGNVMCSL QGKVKTNTSS AKDCDICCSE VGFCHDCCCI LCCKTVDWAY
201: EGYGFIRCEA SVDEQYICGH VAHVECALRS YMAGTVGGSI GLDVEYYCRR CDNKTDLMPH VTKLLKVCES VDSKEDMEKI LNLGFCILRG SEQERAKNLQ
301: NHIRFAIAKL KRGVPLDEIW KVEDSITILP AGDMHHNGNE ITVLGAMDTR TEETRDVCRH KVELLKKIEA ADCRAQSYIT SDYNSVSVKL EGEIDQVLRQ
401: LKRSQEMEYR IAEQKLYVQK DYLLSLYRQL DYERAELENP APSPVAGDCD ALLTNVLHRV DQIKHEEEKL REMMKIASGF GQTPKSVLGD HYGLVIND

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.