Factsheet for GSMUA_Achr1P11210_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15920_001
GSMUA_Achr2P18260_001
GSMUA_Achr3P32460_001
GSMUA_Achr4P30680_001
GSMUA_Achr6P05220_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P26720_001
GSMUA_Achr9P28510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49210.1	GSMUA_Achr10P...	AT2G25490.1	21798944
AT5G49210.1	GSMUA_Achr2P15920_001	AT2G25490.1	21798944
AT5G49210.1	GSMUA_Achr4P30680_001	AT2G25490.1	21798944
AT5G49210.1	GSMUA_Achr6P05220_001	AT2G25490.1	21798944
AT5G49210.1	GSMUA_Achr9P28510_001	AT2G25490.1	21798944
AT5G49210.1	GSMUA_Achr6P08260_001	AT3G11590.1	21798944
AT5G49210.1	GSMUA_Achr6P16290_001	AT3G11590.1	21798944
AT5G49210.1	GSMUA_Achr7P26720_001	AT4G17220.1	21798944
AT5G49210.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944
AT5G49210.1	GSMUA_Achr2P18260_001	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82869	Sorghum	mitochondrion	46.48	54.4
Zm00001d004927_P001	Maize	mitochondrion	47.42	54.3
TraesCS4D01G129000.1	Wheat	mitochondrion	45.54	50.79
TraesCS4B01G134100.1	Wheat	mitochondrion	45.07	50.26
TraesCS4A01G184600.1	Wheat	mitochondrion	45.07	50.26
Os11t0148600-01	Rice	mitochondrion	43.66	50.0
Os12t0146400-01	Rice	mitochondrion	24.41	49.06
VIT_05s0029g01220.t01	Wine grape	mitochondrion	44.13	47.96
KRH01771	Soybean	mitochondrion	38.97	47.43
KRH46915	Soybean	mitochondrion	39.44	47.19
Solyc05g053730.2.1	Tomato	nucleus	42.72	45.5
PGSC0003DMT400040750	Potato	mitochondrion	41.31	44.0
HORVU4Hr1G025670.1	Barley	mitochondrion	43.19	42.59
CDY56435	Canola	mitochondrion	36.15	39.9
CDX86248	Canola	mitochondrion	35.68	39.38
Bra020657.1-P	Field mustard	mitochondrion, nucleus	36.15	39.09
CDY33924	Canola	mitochondrion, nucleus	36.15	39.09
AT5G49210.1	Thale cress	mitochondrion	35.68	38.97
Bra037430.1-P	Field mustard	mitochondrion	35.21	38.86
CDY70877	Canola	mitochondrion	36.62	34.51
KXG38100	Sorghum	plastid	31.46	29.26

Protein Annotations

EnsemblPlants:GSMUA_Achr1P11210_001	EnsemblPlants:GSMUA_Achr1T11210_001	EnsemblPlantsGene:GSMUA_Achr1G11210_001	ncoils:Coil	PANTHER:PTHR36402	SEG:seg
UniParc:UPI0002952E36	UniProt:M0RYY0	MapMan:35.2	:	:	:

Description

Putative Reticulocyte-binding protein 2 homolog a [Source:GMGC_GENE;Acc:GSMUA_Achr1G11210_001]

Coordinates

chr1:-:8551702..8555837

Molecular Weight (calculated)

24795.8 Da

IEP (calculated)

11.007

GRAVY (calculated)

-0.994

Length

213 amino acids

Sequence
(BLAST)

001: MATVRFLRIR AARVPSSSPP LPPLLARFSR THSTTTDAAP DAASPPPVPH RRYPPPRPHE FSKPCELIGT WTPGANPREA AARLDRLHRD YRKQMKQVRA
101: KYAYEMELLR IENQRKDDAR REAARLANVE RKKAKAAAAE TRAAERKAFK EELRLTLLKE RTQKLESWRA KENLREEKEA EKKELLRRQS SVWIKDENFE
201: RRMLEAIVDT TPL

Best Arabidopsis Sequence Match ( AT5G49210.1 )
(BLAST)

001: MAFCNKLSRF VRRQSENASM IGSLRSFSAD ATHHRFHQET HNFLEPEYYI GSWEAPSDPK DAERKLAQLR RDYAKKVRVY RKEYIHEIEM LRVEKQRKDE
101: ARLLAERAAN EERRLLKAEA AKVRAEERKI ADEEFRQTLI KERAEKLEMW KMMGQKREEK IKEREKLLRE QSSLWIEQKE LERKITEALV DNVVL

Arabidopsis Description

AT5g49210/K21P3_8 [Source:UniProtKB/TrEMBL;Acc:Q945P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.