Factsheet for Solyc05g053730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087650.2.1
Solyc03g096000.2.1
Solyc04g015010.2.1
Solyc05g052510.2.1
Solyc06g030610.1.1
Solyc06g030620.1.1
Solyc06g049010.1.1
Solyc06g051310.2.1
Solyc08g060810.2.1
Solyc10g083190.1.1
Solyc11g012660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49210.1	Solyc06g030610.1.1	AT2G25490.1	21798944
AT5G49210.1	Solyc06g030620.1.1	AT2G25490.1	21798944
AT5G49210.1	Solyc06g049010.1.1	AT2G25490.1	21798944
AT5G49210.1	Solyc08g060810.2.1	AT2G25490.1	21798944
AT5G49210.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT5G49210.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT5G49210.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT5G49210.1	Solyc10g083190.1.1	AT3G11590.1	21798944
AT5G49210.1	Solyc04g015010.2.1	AT4G17220.1	21798944
AT5G49210.1	Solyc11g012660.1.1	AT4G17220.1	21798944
AT5G49210.1	Solyc01g087650.2.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040750	Potato	mitochondrion	97.0	97.0
KRH01771	Soybean	mitochondrion	49.5	56.57
KRH46915	Soybean	mitochondrion	49.0	55.06
CDY56435	Canola	mitochondrion	51.5	53.37
VIT_05s0029g01220.t01	Wine grape	mitochondrion	52.0	53.06
Bra037430.1-P	Field mustard	mitochondrion	50.5	52.33
CDX86248	Canola	mitochondrion	50.5	52.33
AT5G49210.1	Thale cress	mitochondrion	50.5	51.79
Bra020657.1-P	Field mustard	mitochondrion, nucleus	50.0	50.76
CDY33924	Canola	mitochondrion, nucleus	49.5	50.25
Os11t0148600-01	Rice	mitochondrion	43.5	46.77
Zm00001d004927_P001	Maize	mitochondrion	42.5	45.7
OQU82869	Sorghum	mitochondrion	41.5	45.6
TraesCS4A01G184600.1	Wheat	mitochondrion	43.0	45.03
TraesCS4B01G134100.1	Wheat	mitochondrion	43.0	45.03
TraesCS4D01G129000.1	Wheat	mitochondrion	43.0	45.03
CDY70877	Canola	mitochondrion	49.5	43.81
GSMUA_Achr1P11210_001	Banana	mitochondrion	45.5	42.72
Os12t0146400-01	Rice	mitochondrion	21.5	40.57
HORVU4Hr1G025670.1	Barley	mitochondrion	42.0	38.89
KXG38100	Sorghum	plastid	27.0	23.58

Protein Annotations

EnsemblPlants:Solyc05g053730.2.1	EnsemblPlantsGene:Solyc05g053730.2	ncoils:Coil	PANTHER:PTHR36402	SEG:seg	UniParc:UPI0002766525
UniProt:K4C253	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr5:+:63763118..63766934

Molecular Weight (calculated)

23890.5 Da

IEP (calculated)

10.399

GRAVY (calculated)

-1.345

Length

200 amino acids

Sequence
(BLAST)

001: MSLYRQLLRK TPAAQTLKPI LRSISTTADS TSTAGQSHHN DHQRNHEFRP PSDYLNSWTA PKDPKEAEAK LARLRREYAK KVKEVRKEYI QEMELQRIEK
101: MRKDEAKKEA QRIANEERKV AKAAEKKAKA KEREAAEEEF RKTLLKERQE KLEYWRMREE NFSKKKKEKN DLLRRQSSMW IDEKELEKKT LEAIVDTVHL

Best Arabidopsis Sequence Match ( AT5G49210.1 )
(BLAST)

001: MAFCNKLSRF VRRQSENASM IGSLRSFSAD ATHHRFHQET HNFLEPEYYI GSWEAPSDPK DAERKLAQLR RDYAKKVRVY RKEYIHEIEM LRVEKQRKDE
101: ARLLAERAAN EERRLLKAEA AKVRAEERKI ADEEFRQTLI KERAEKLEMW KMMGQKREEK IKEREKLLRE QSSLWIEQKE LERKITEALV DNVVL

Arabidopsis Description

AT5g49210/K21P3_8 [Source:UniProtKB/TrEMBL;Acc:Q945P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.