Factsheet for Solyc04g015010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005330.2.1
Solyc01g073920.2.1
Solyc02g082100.2.1
Solyc02g091710.2.1
Solyc03g095610.2.1
Solyc04g008040.2.1
Solyc05g017980.2.1
Solyc06g009750.2.1
Solyc07g052050.1.1
Solyc07g052190.1.1
Solyc08g005910.2.1
Solyc08g022030.2.1
Solyc09g065280.2.1
Solyc10g005220.2.1
Solyc10g080400.1.1
Solyc10g083190.1.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17220.1	Solyc07g052050.1.1	AT1G03140.1	21798944
AT4G17220.1	Solyc07g052190.1.1	AT1G03140.1	21798944
AT4G17220.1	Solyc09g065280.2.1	AT1G03140.1	21798944
AT4G17220.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT4G17220.1	Solyc10g005220.2.1	AT1G30860.1	21798944
AT4G17220.1	Solyc01g005330.2.1	AT1G68060.1	21798944
AT4G17220.1	Solyc04g008040.2.1	AT1G68060.1	21798944
AT4G17220.1	Solyc05g017980.2.1	AT1G68060.1	21798944
AT4G17220.1	Solyc02g091710.2.1	AT2G22680.1	21798944
AT4G17220.1	Solyc01g073920.2.1	AT2G32840.1	21798944
AT4G17220.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT4G17220.1	Solyc10g083190.1.1	AT3G11590.1	21798944
AT4G17220.1	Solyc06g009750.2.1	AT4G02150.1	21798944
AT4G17220.1	Solyc08g022030.2.1	AT4G32190.1	21798944
AT4G17220.1	Solyc03g095610.2.1	AT5G05190.1	21798944
AT4G17220.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT4G17220.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038827	Potato	cytosol	87.47	84.36
Solyc11g012660.1.1	Tomato	nucleus	67.56	58.75
Solyc12g021250.1.1	Tomato	cytosol	15.2	54.81
KRH11576	Soybean	cytosol	60.99	52.01
Bra026236.1-P	Field mustard	cytosol	52.98	51.91
CDY09638	Canola	cytosol	53.59	51.89
AT4G17220.1	Thale cress	cytosol	54.62	51.85
CDX90483	Canola	cytosol	53.18	51.49
CDY42967	Canola	cytosol, nucleus, plasma membrane	52.77	51.4
KRH36588	Soybean	cytosol	60.16	51.31
VIT_00s0194g00260.t01	Wine grape	cytosol	60.99	50.86
CDY35590	Canola	cytosol	53.59	50.78
KRH51187	Soybean	cytosol	57.29	48.69
GSMUA_Achr7P26720_001	Banana	cytosol	50.51	47.77
KRH01966	Soybean	mitochondrion	54.62	47.16
Zm00001d028219_P001	Maize	cytosol	43.74	41.68
Solyc04g008040.2.1	Tomato	nucleus	52.77	41.65
TraesCS4B01G245400.1	Wheat	nucleus	45.38	41.62
Os03t0215700-01	Rice	cytosol	43.94	41.55
Solyc01g005330.2.1	Tomato	cytosol	52.98	41.48
Solyc05g017980.2.1	Tomato	cytosol	52.57	41.16
EER95273	Sorghum	cytosol	42.51	40.51
TraesCS4A01G078900.2	Wheat	nucleus	43.12	39.55
HORVU4Hr1G067630.12	Barley	nucleus	42.09	39.05
TraesCS4D01G244000.1	Wheat	nucleus	41.48	38.04

Protein Annotations

EnsemblPlants:Solyc04g015010.2.1	EnsemblPlantsGene:Solyc04g015010.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007010
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP70	ncoils:Coil
PANTHER:PTHR31246	PANTHER:PTHR31246:SF5	PFAM:PF07058	SEG:seg	UniParc:UPI00027667F6	UniProt:K4BQ04
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:5219478..5223595

Molecular Weight (calculated)

55571.5 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.738

Length

487 amino acids

Sequence
(BLAST)

001: MSGFYEVCGE ELFHVHPDPV ILELNNLQNQ LKEKDRELGA AVSEIKALKA SEVLKDKALE ELGNEFQRLE GKLKIGEDVV EQKNLDIKRL VNEKKEALAA
101: QHAAEATLRR VYADQKDDDA PPLESIIAPL EAEIKMYKNE IAALQEDTRS LERHTRSKEA ALLEAERILK SALERALIVE EIQNQNFELR RQIEIFQEEN
201: KILDKTNRQK ILEVEKLSQT IIELEEAILA GGAAANTLRD YKRRISELQE EKRTLERELS RVKVSANRVA TVVANEWKDE NDKVMPVKQW LEERRLLQAE
301: MQRLRDKLSI SERTAKAEAQ LKDKLKLRLK TLEEGLKQAF NPNGSTKPQK TKHYLGNSLV KKSLWTSQNK IIGSTVGKEN AETKENSIMD INSKETIDAH
401: KIKNGGGDQD EIKTNGCSQS VNDDIVSGFL YDKLQKEVIC LRKFCETKES ALNTKDEEIK ILTKKIETLS KAIEVEARKR KVKQQGS

Best Arabidopsis Sequence Match ( AT4G17220.1 )
(BLAST)

001: MTAAENPFVS DTSSLQSQLK EKEKELLAAK AEVEALRTNE ELKDRVFKEL RENVRKLEEK LGATENQVDQ KELERKKLEE EKEDALAAQD AAEEALRRVY
101: THQQDDDSLP LESIIAPLES QIKIHKHEIS ALQEDKKALE RLTKSKESAL LEAERILRSA LERALIVEEV QNHNFELRRQ IEICQDENKF LEKINRQKVL
201: EIEKLSQSIV ELEEAILAGG TAANAVRDYR RQISQLNDEK RTLERELARV KVSASRVALA VANEWKDEND RVMPVKQWLE ERRILHGEMQ KLKDKLAVSE
301: RTAKAESQLK ERLKLRLKTI EDGLKGPNTF FVSPTTKTEK SGKILGFLTS GGGSKKRSSS QLRGSVTGRI HAMNQPIDRV GESDEMENSK ITANGLTDQH
401: EEDSERKTEE DGNVYSEDMV SGFLYDRLQK EVIALRKLCE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALAML NEESKLCRKA
501: KLPRSRIPNP RCQ

Arabidopsis Description

MAP70.5Microtubule-associated protein 70-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.