Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060963 | Potato | nucleus | 93.07 | 84.31 |
| Bra004677.1-P | Field mustard | nucleus | 43.29 | 44.84 |
| CDX79885 | Canola | nucleus | 43.29 | 44.84 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 51.08 | 44.36 |
| CDY53501 | Canola | nucleus | 42.86 | 44.2 |
| KRH67023 | Soybean | nucleus | 41.13 | 44.19 |
| AT2G42260.1 | Thale cress | cytosol | 47.19 | 42.08 |
| KRG95339 | Soybean | mitochondrion, plastid | 39.39 | 41.36 |
| AT3G57860.1 | Thale cress | cytosol | 42.42 | 40.33 |
| CDY22476 | Canola | cytosol | 12.99 | 38.46 |
| CDY06071 | Canola | cytosol | 38.53 | 35.74 |
| Bra007362.1-P | Field mustard | cytosol | 38.1 | 35.63 |
| CDX98240 | Canola | mitochondrion | 21.64 | 33.11 |
| CDX71989 | Canola | plastid | 37.66 | 28.62 |
| CDY08664 | Canola | cytosol | 15.15 | 25.93 |
Protein Annotations
| EnsemblPlants:Solyc10g080400.1.1 | EnsemblPlantsGene:Solyc10g080400.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0051783 | GO:GO:1904667 | InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 | SEG:seg |
| UniParc:UPI00027694A6 | UniProt:K4D2T0 | MapMan:13.3.4.1.5 | : | : | : |
Description
No Description!
Coordinates
chr10:+:61680539..61682960
Molecular Weight (calculated)
25792.7 Da
IEP (calculated)
11.585
GRAVY (calculated)
-0.912
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGGIEIFE DESPESSSRA PIQTTAEAGR MAGTSGGRGG IGRIGFGSPR NRRGRNLFRT PARVIGRQNI SPTGQGRNRG RHSVLPAWYP RTPLRDITSI
101: VRAIERTRAR LRESEGEQLE SVVPQDHTDL GPSESTSGAQ LEHTNSLITP RPKTRSRYHT RSVGKVPKIL LDITNQSTSE DAECLTPQRK LLNSIDTVEK
201: HVMEELHKLK RTPSARKQER DKRVKTLMSM R
101: VRAIERTRAR LRESEGEQLE SVVPQDHTDL GPSESTSGAQ LEHTNSLITP RPKTRSRYHT RSVGKVPKIL LDITNQSTSE DAECLTPQRK LLNSIDTVEK
201: HVMEELHKLK RTPSARKQER DKRVKTLMSM R
001: MPEARDRIER QVDYPAAFLN RRSHGILLDE PATQHNLFGS PVQRVPSEAT GGLGSIGQGS MTGRGGLVRG NFGIRRTGGG RRGQIQFRSP QGRENMSLGV
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
Arabidopsis Description
PYMProtein POLYCHOME [Source:UniProtKB/Swiss-Prot;Acc:O48533]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.