Factsheet for Solyc01g067490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g079050.2.1
Solyc03g097210.2.1
Solyc03g113740.2.1
Solyc08g067190.2.1
Solyc08g076580.2.1
Solyc10g080400.1.1
Solyc12g014320.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39090.1	Solyc08g067190.2.1	AT1G06590.1	20706207
AT2G39090.1	Solyc08g076580.2.1	AT1G32310.1	20706207
AT2G39090.1	Solyc12g014320.1.1	AT1G78770.1	20706207
AT2G39090.1	Solyc10g080400.1.1	AT2G42260.1	20706207
AT2G39090.1	Solyc03g113740.2.1	AT3G48150.1	20706207
AT2G39090.1	Solyc02g079050.2.1	AT4G21530.1	20706207
AT2G39090.1	Solyc03g097210.2.1	AT4G27600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g01730.t01	Wine grape	cytosol	82.0	82.14
KRH11210	Soybean	cytosol	79.68	79.82
KRH21040	Soybean	nucleus	79.32	79.46
GSMUA_Achr5P26960_001	Banana	cytosol	75.22	75.22
Bra005063.1-P	Field mustard	cytosol	71.12	71.51
CDY44628	Canola	cytosol	70.94	71.33
AT2G39090.1	Thale cress	cytosol	70.94	71.33
CDX74867	Canola	cytosol	70.77	71.15
TraesCS1D01G098700.1	Wheat	cytosol	66.13	66.13
HORVU1Hr1G021230.8	Barley	cytosol	65.24	65.95
TraesCS1A01G090300.1	Wheat	cytosol	65.78	65.78
TraesCS1B01G118300.2	Wheat	cytosol	65.78	65.78
Os05t0149900-01	Rice	cytosol	65.6	65.6
Zm00001d024858_P004	Maize	cytosol	64.71	64.94
KXG21309	Sorghum	cytosol	64.53	62.74
CDY53538	Canola	mitochondrion	16.93	62.09
CDY06464	Canola	cytosol	14.79	58.45

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K4AWZ7	PFAM:PF13181	PFAM:PF13432	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF8	SMART:SM00028	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc01g067490.2
EnsemblPlants:Solyc01g067490.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002762F75	SEG:seg

Description

Anaphase-promoting complex subunit 7 [Source:Projected from Arabidopsis thaliana (AT2G39090) UniProtKB/Swiss-Prot;Acc:Q8VY89]

Coordinates

chr1:-:76189646..76205215

Molecular Weight (calculated)

63044.6 Da

IEP (calculated)

6.762

GRAVY (calculated)

-0.283

Length

561 amino acids

Sequence
(BLAST)

001: MDVPKDYMTT LLDHGLFASA QMLGSFLVSS SSVNLDTSPH LKAENLVLLG DALLRDKEYK RAVHAYKQAL HCHRIIPKQN ASAVRSSLSA STRSSSPNSF
101: NISTVNENEV KFKIASLYFV LNENRAALVE MEGIPSKARN LQMNLLMGKL YRNSRHTRAA ITCYKECLRH CPCIIEAIIA LAEMGVAAKD IISLFPQTPT
201: RGARSTFDHF DSSRWLQRYV EAQCCIASND YKGGLEFFAE LLRRFPNNIH ILLEMAKVEA IIGKTEEAIT DFEKVRSIDP YVITYMDEYA MLLKLKSDNS
301: KLHRLVHDLL NIDPNRPEVF VALSVLWERR DERGALSYIE KSIRIDERHI PGYIMKGNIY LSMNRPEAAV VAFRGAQQLR PDLRSYQGLV RSYLAISNIK
401: EALYAAREAM KAMPQSAKAL KLVGDVHASS TSGREKAKKF YESALRLEPG YLGAALALAE LHVIEGRNGD AVTLLERYLK DWADDSLHVK LAQVFAATNM
501: LQDALSHYHA ALRINPQNEA ANKGLDRLEK QLKGVDPDAP EEDEENDVED ADADQEETEL L

Best Arabidopsis Sequence Match ( AT2G39090.1 )
(BLAST)

001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM

Arabidopsis Description

APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.