Factsheet for Bra005063.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004677.1-P
Bra013534.1-P
Bra015512.1-P
Bra018081.1-P
Bra019040.1-P
Bra026335.1-P
Bra027173.1-P
Bra032414.1-P
Bra033769.1-P
Bra035062.1-P
Bra040769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39090.1	Bra015512.1-P	AT1G06590.1	20706207
AT2G39090.1	Bra032414.1-P	AT1G06590.1	20706207
AT2G39090.1	Bra040769.1-P	AT1G32310.1	20706207
AT2G39090.1	Bra035062.1-P	AT1G78770.1	20706207
AT2G39090.1	Bra004677.1-P	AT2G42260.1	20706207
AT2G39090.1	Bra027173.1-P	AT3G16320.1	20706207
AT2G39090.1	Bra018081.1-P	AT3G48150.1	20706207
AT2G39090.1	Bra033769.1-P	AT3G48150.1	20706207
AT2G39090.1	Bra013534.1-P	AT4G21530.1	20706207
AT2G39090.1	Bra019040.1-P	AT4G27600.1	21798944
AT2G39090.1	Bra026335.1-P	AT4G27600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74867	Canola	cytosol	99.64	99.64
CDY44628	Canola	cytosol	99.28	99.28
AT2G39090.1	Thale cress	cytosol	93.91	93.91
VIT_05s0020g01730.t01	Wine grape	cytosol	75.09	74.82
CDY53538	Canola	mitochondrion	20.43	74.51
KRH11210	Soybean	cytosol	73.66	73.39
KRH21040	Soybean	nucleus	73.3	73.04
Solyc01g067490.2.1	Tomato	cytosol	71.51	71.12
GSMUA_Achr5P26960_001	Banana	cytosol	69.0	68.63
CDY06464	Canola	cytosol	17.03	66.9
Os05t0149900-01	Rice	cytosol	62.01	61.68
HORVU1Hr1G021230.8	Barley	cytosol	61.11	61.44
TraesCS1A01G090300.1	Wheat	cytosol	61.29	60.96
TraesCS1B01G118300.2	Wheat	cytosol	61.29	60.96
TraesCS1D01G098700.1	Wheat	cytosol	61.29	60.96
Zm00001d024858_P004	Maize	cytosol	60.22	60.11
KXG21309	Sorghum	cytosol	59.86	57.89

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.3	EnsemblPlantsGene:Bra005063	EnsemblPlants:Bra005063.1	EnsemblPlants:Bra005063.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4CLH6
PFAM:PF13176	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF8
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00025475A3
SEG:seg	:	:	:	:	:

Description

AT2G39090 (E=1e-259) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA05:+:3244118..3247972

Molecular Weight (calculated)

62156.3 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.262

Length

558 amino acids

Sequence
(BLAST)

001: MDVPKDQIAT LMEHGLYDSA EMLGCFLVSS STVSAEASPH LKAETLILLG DALFHQREYR RAIHTYKQAL HHCARVPKQS SGISRSSLSL STRSSVNASS
101: VSAINENEVR FKIASSHFAL SETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAIIGLAE LGATAKDIIS AFTQTSSRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TCMDEYAMLL QMKCDYSRLN
301: KLVHDLLSID HTRAEVFVAL SVLWERKDPR TALSYAEKSI RVDERHIPGY IVKGNFLLLA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHANTSSG REKAKKFYES ALRLEPGYLG AAIALADLHL MEGRNGDAVS LLERYLKDWA DESLHVKLAQ VFAATNMLQD
501: SLSHYQAALR INPQNEAAKK GLDRLEKQMK GIDPDAADEN DENDVEDVDG DTEEAELM

Best Arabidopsis Sequence Match ( AT2G39090.1 )
(BLAST)

001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM

Arabidopsis Description

APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.