Factsheet for Bra040769.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002473.1-P
Bra002918.1-P
Bra003606.1-P
Bra006176.1-P
Bra008416.1-P
Bra008470.1-P
Bra008862.1-P
Bra009789.1-P
Bra011081.1-P
Bra013534.1-P
Bra015169.1-P
Bra018081.1-P
Bra033531.1-P
Bra033769.1-P
Bra035565.1-P
Bra036522.1-P
Bra039034.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32310.1	Bra003606.1-P	AT1G79530.1	20706207
AT1G32310.1	Bra008416.1-P	AT1G79530.1	20706207
AT1G32310.1	Bra008470.1-P	AT1G80480.1	20706207
AT1G32310.1	Bra015169.1-P	AT2G05830.1	20706207
AT1G32310.1	Bra039034.1-P	AT2G20000.1	20706207
AT1G32310.1	Bra018081.1-P	AT3G48150.1	20706207
AT1G32310.1	Bra033769.1-P	AT3G48150.1	20706207
AT1G32310.1	Bra033531.1-P	AT4G16130.1	20706207
AT1G32310.1	Bra013534.1-P	AT4G21530.1	20706207
AT1G32310.1	Bra011081.1-P	AT4G26870.1	20706207
AT1G32310.1	Bra006176.1-P	AT5G13030.1	20706207
AT1G32310.1	Bra008862.1-P	AT5G13030.1	20706207
AT1G32310.1	Bra009789.1-P	AT5G24690.1	20706207
AT1G32310.1	Bra036522.1-P	AT5G24690.1	20706207
AT1G32310.1	Bra002918.1-P	AT5G55280.1	20706207
AT1G32310.1	Bra035565.1-P	AT5G55280.1	20706207
AT1G32310.1	Bra002473.1-P	AT5G60540.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G32310.1	Thale cress	cytosol	82.83	82.0
CDY61823	Canola	cytosol	89.9	81.65
CDY32305	Canola	cytosol	88.89	80.73
VIT_05s0124g00450.t01	Wine grape	plastid	53.54	60.92
KRH39569	Soybean	cytosol, plastid	64.65	57.14
KRH74384	Soybean	cytosol, plastid	62.63	54.39
Solyc08g076580.2.1	Tomato	cytosol	57.58	50.44
PGSC0003DMT400038358	Potato	plastid	53.54	49.53
TraesCS1D01G197800.1	Wheat	cytosol	45.45	44.12
TraesCS1B01G208900.1	Wheat	cytosol	45.45	44.12
TraesCS1A01G193900.1	Wheat	cytosol	45.45	44.12
GSMUA_Achr5P14060_001	Banana	nucleus	47.47	42.34
HORVU1Hr1G050750.1	Barley	cytosol, mitochondrion, plasma membrane	23.23	41.82
Os10t0575950-01	Rice	cytosol	41.41	41.41
Zm00001d030079_P001	Maize	cytosol, nucleus, plastid	36.36	39.56
KXG34154	Sorghum	cytosol	20.2	36.36
OQU80353	Sorghum	cytosol	35.35	36.08
EER94435	Sorghum	cytosol	40.4	33.06
OQU76519	Sorghum	extracellular	29.29	20.28
KXG30734	Sorghum	extracellular	28.28	17.61

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra040769	EnsemblPlants:Bra040769.1	EnsemblPlants:Bra040769.1-P	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009555	GO:GO:0009556	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0040007	GO:GO:0045732	GO:GO:0046621	UniProt:M4FI40	PANTHER:PTHR37387	InterPro:SAMBA
UniParc:UPI000253E87F	SEG:seg	:	:	:	:

Description

AT1G32310 (E=8e-031) | unknown protein

Coordinates

chrScaffold000254:-:17089..17585

Molecular Weight (calculated)

10697.7 Da

IEP (calculated)

5.691

GRAVY (calculated)

-0.373

Length

99 amino acids

Sequence
(BLAST)

1: MNGASPAHSS VSTTAVAGGG GSSGAAAGLD DFPFPPDIPS MQDRKDEAMR VLKTDLMGEL EKEVKSLEED SWMFQGPRSR IHLISRRGYL LLSLIYSKQ

Best Arabidopsis Sequence Match ( AT1G32310.1 )
(BLAST)

1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW

Arabidopsis Description

SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.