Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0575950-01 | Rice | cytosol | 82.42 | 75.76 |
| TraesCS1A01G193900.1 | Wheat | cytosol | 84.62 | 75.49 |
| HORVU1Hr1G050750.1 | Barley | cytosol, mitochondrion, plasma membrane | 45.05 | 74.55 |
| TraesCS1D01G197800.1 | Wheat | cytosol | 83.52 | 74.51 |
| TraesCS1B01G208900.1 | Wheat | cytosol | 83.52 | 74.51 |
| EER94435 | Sorghum | cytosol | 93.41 | 70.25 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 45.05 | 47.13 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 54.95 | 45.05 |
| OQU76519 | Sorghum | extracellular | 67.03 | 42.66 |
| Solyc08g076580.2.1 | Tomato | cytosol | 47.25 | 38.05 |
| AT1G32310.1 | Thale cress | cytosol | 41.76 | 38.0 |
| PGSC0003DMT400038358 | Potato | plastid | 43.96 | 37.38 |
| Bra040769.1-P | Field mustard | cytosol | 39.56 | 36.36 |
| KRH39569 | Soybean | cytosol, plastid | 43.96 | 35.71 |
| KRH74384 | Soybean | cytosol, plastid | 43.96 | 35.09 |
| CDY61823 | Canola | cytosol | 41.76 | 34.86 |
| CDY32305 | Canola | cytosol | 40.66 | 33.95 |
| KXG30734 | Sorghum | extracellular | 58.24 | 33.33 |
Protein Annotations
| EntrezGene:100277622 | MapMan:35.2 | UniProt:B6TX99 | ncoils:Coil | EMBL:EU969614 | EMBL:EU975165 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009555 | GO:GO:0009556 | GO:GO:0009987 | GO:GO:0010997 |
| GO:GO:0019538 | GO:GO:0040007 | GO:GO:0045732 | GO:GO:0046621 | ProteinID:ONM00138.1 | PANTHER:PTHR37387 |
| InterPro:SAMBA | UniParc:UPI000182D85D | EnsemblPlantsGene:Zm00001d030079 | EnsemblPlants:Zm00001d030079_P001 | EnsemblPlants:Zm00001d030079_T001 | : |
Description
FAD-binding domain-containing protein
Coordinates
chr1:-:104118705..104119586
Molecular Weight (calculated)
10128.9 Da
IEP (calculated)
6.874
GRAVY (calculated)
-0.624
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSPARSTIS AAEDVADSID ALYRKDEALA ELKSEVMEAL QREVRSLDED NWMFAAPRSR INLVSRPGAY LPKQNGKLSE LGQASKKTRN F
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Arabidopsis Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.