Factsheet for Zm00001d045897_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 29575040

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G046290.3	Barley	cytosol	75.93	90.39
TraesCS7A01G227000.1	Wheat	mitochondrion	79.66	83.01
TraesCS7D01G227400.2	Wheat	mitochondrion	79.35	82.69
TraesCS7B01G192600.1	Wheat	mitochondrion	79.19	82.52
Os06t0320700-01	Rice	plasma membrane	79.81	82.11
GSMUA_Achr3P11720_001	Banana	cytosol	72.05	81.4
GSMUA_Achr7P06390_001	Banana	cytosol	65.84	78.37
VIT_06s0004g01360.t01	Wine grape	cytosol	70.03	78.3
Solyc01g006490.2.1	Tomato	cytosol	68.32	76.66
PGSC0003DMT400082019	Potato	cytosol	67.86	76.13
Bra006176.1-P	Field mustard	cytosol	66.61	74.87
KRG93074	Soybean	nucleus	67.24	73.39
OQU76338	Sorghum	mitochondrion	75.0	71.56
Solyc12g100200.1.1	Tomato	plastid	67.55	70.39
CDX78502	Canola	plastid	67.24	69.84
Bra008862.1-P	Field mustard	plastid	69.25	69.47
CDX97219	Canola	plastid	68.79	69.44
AT5G13030.1	Thale cress	plastid	68.17	69.35
CDX69676	Canola	plastid	69.1	69.31
CDX70490	Canola	plastid	67.08	68.14

Protein Annotations

EnsemblPlants:Zm00001d045897_P003	EnsemblPlants:Zm00001d045897_T003	EnsemblPlantsGene:Zm00001d045897	HAMAP:MF_00692	InterPro:UPF0061	PANTHER:PTHR32057
PFAM:PF02696	ProteinID:AQL03397.1	SEG:seg	UniParc:UPI000842DD1E	UniProt:A0A1D6NZR8	MapMan:35.2

Description

UPF0061 protein azo1574

Coordinates

chr9:-:46367157..46373527

Molecular Weight (calculated)

71513.4 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.277

Length

644 amino acids

Sequence
(BLAST)

001: MPPQFPTARL LLPSHRLLPL LSPLPSASLS PAPRTLRLPP PQLLHRVARR RPLLRGMASA AAPGSHAAAE APPVDVGGGG AGAPRRLVLE ELPWDHSFVR
101: ELPGDPRSDT IPREVLHACY SRVSPSAKVD NPKLVAWSDS VADLLDLDHK EFERPDFPQF FSGATPLVGS LPYAQCYGGH QFGVWAGQLG DGRAIALGEV
201: VNSRGERWEL QLKGCGKTPY SRFADGLAVL RSSIREFLCS EAMHGLGIPT TRALCLVETG KSVVRDMFYD GNAKEEPGAI VCRVAPSFLR FGSYQIHASR
301: GKEDIEIVRR LADYTIHHHF PHLENMKKSE GLSFETAIGD SPTIDLTSNK YAGKYLSWAV EVAERTAYLI ARWQGVGFTH GVLNTDNMSV LGLTIDYGPF
401: GFLDAFDPSY TPNTTDLPGK RYCFANQPDV GLWNIAQFTG PLSSAELISQ DEANYVMERY GTKFMDEYQS IMTKKLGLTK YNKQLISKLL SNMAVDKVDY
501: TNFFRLLSNV NADPGIPENE LLVPLKAALL DIGKERKEAW ISWVQTYIEE SNDVVHSVWK LVESGVPDEE RKAAMNSVNP KYILRNYLCQ SAIDVAEQGD
601: YEEVRRVLRV MHNPYDEQPG MEKYARLPPA WAYRPGVCML SCSS

Best Arabidopsis Sequence Match ( AT5G13030.1 )
(BLAST)

001: MLLRVCCPSS FFYLRPLHLF SSTAKVPFCP SLPRQFRLSP SRSSSFRRME SSPASSSSPT PVTDSSADSL AKDLQNQSLG AVDEGVKIKK KLEDFNWDHS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS

Arabidopsis Description

Selenoprotein O [Source:UniProtKB/TrEMBL;Acc:Q8H126]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.